9QLD image
Deposition Date 2025-03-20
Release Date 2025-10-29
Last Version Date 2026-01-28
Entry Detail
PDB ID:
9QLD
Keywords:
Title:
Rhombohedral crystalline form of human insulin complexed with m-nitrophenol
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.55 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
H 3
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Insulin A chain
Gene (Uniprot):INS
Chain IDs:A, C
Chain Length:21
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Insulin B chain
Gene (Uniprot):INS
Chain IDs:B, D
Chain Length:30
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Exploring humidity effects on polycrystalline human insulin-ligand complexes: preliminary crystallographic insights.
J.Appl.Crystallogr. 58 1920 1935 (2025)
PMID: 41551492 DOI: 10.1107/S1600576725007484

Abstact

This study investigates the effect of relative humidity (RH) on the crystal structures of human insulin (HI) complexes with organic ligands, m-cresol and m-nitro-phenol, using in situX-ray powder diffraction (XRPD) with a controlled-humidity chamber. Co-crystallization at pH 7.5 produced hexagonal microcrystals (space group R3) for both protein-ligand complexes. The corresponding single-crystal X-ray diffraction structures were solved: HI-m-cresol (PDB entry 9ibb, 1.84 Å) and HI-m-nitro-phenol (PDB entry 9qld, 2.55 Å). Pawley analysis of the in situ XRPD data revealed structural stability up to 70% RH, with no phase transitions observed. At lower humidity levels, reduced diffraction intensities indicated loss of crystallinity, which was fully restored upon rehydration to 95% RH. Notably, each complex exhibited distinct changes in unit-cell parameters during dehydration-rehydration cycles. These results highlight the critical role of controlling environmental factors in structure-based drug design and pharmaceutical manufacturing, and demonstrate how organic ligands can enhance the stability of protein crystals, offering valuable insights for pharmaceutical development.

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