9QG8 image
Deposition Date 2025-03-13
Release Date 2025-07-23
Last Version Date 2025-11-12
Entry Detail
PDB ID:
9QG8
Keywords:
Title:
Crystal structure of the great reed warbler MHC class I in complex with an 8-mer peptide
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.15 Å
R-Value Free:
0.26
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:MHC class I antigen
Chain IDs:A
Chain Length:275
Number of Molecules:1
Biological Source:Acrocephalus arundinaceus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Beta-2-microglobulin
Gene (Uniprot):B2M
Chain IDs:B
Chain Length:122
Number of Molecules:1
Biological Source:Acrocephalus arundinaceus
Polymer Type:polypeptide(L)
Molecule:LYS-THR-MET-MET-ALA-HIS-ASP-LEU
Chain IDs:C (auth: K)
Chain Length:8
Number of Molecules:1
Biological Source:Legionella
Ligand Molecules
Primary Citation
MHC I of the Great Reed Warbler Promotes a Flat Peptide Binding Mode.
Immunology 176 508 519 (2025)
PMID: 40643222 DOI: 10.1111/imm.70015

Abstact

The major histocompatibility complex (MHC) plays a key role in pathogen recognition as part of the adaptive immune system. MHC I gene copy numbers in birds of the order Passeriformes (songbirds) are substantially larger compared to other birds. MHC I diversity and antigen presentation have been carefully characterised in chicken Gallus gallus of the order Galliformes; chickens express few MHC I genes and often present antigens that bulge out of the peptide binding cleft. This observation raises the question of whether MHC I presents antigens in a similar way in species with many MHC genes? Here, we present the X-ray structure of MHC I from the great reed warbler Acrocephalus arundinaceus (Acar3) a long-distance migratory songbird. Structural analysis shows that MHC I binds the antigen in a flat conformation due to a sequentially well-conserved restriction point, acting like a pair of tweezers, within the peptide binding grove, created by Arg97 and Arg155. This more stringent antigen presentation by Acar MHC I molecules may partly explain the high MHC gene copy numbers seen in the great reed warbler.

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Primary Citation of related structures
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