ISDA: 9QEE

Deposition Date 2025-03-09

Release Date 2025-12-17

Last Version Date 2025-12-17

Entry Detail

PDB ID:

9QEE

Keywords:

HYDROLASE

Title:

Cryo-EM structure of a DNA-bound XPF-ERCC1-SLX4(330-555)-SLX4IP complex

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)
synthetic construct (Taxon ID: 32630)

Host Organism:

Spodoptera frugiperda

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.40 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA repair endonuclease XPF
Gene (Uniprot):ERCC4
Chain IDs:F (auth: A)
Chain Length:935
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q92889 Pfam ID:PF02732

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA excision repair protein ERCC-1
Gene (Uniprot):ERCC1
Chain IDs:A (auth: B)
Chain Length:297
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P07992 Pfam ID:PF03834, PF00633

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Protein SLX4IP
Gene (Uniprot):SLX4IP
Chain IDs:B (auth: C)
Chain Length:408
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q5VYV7 Pfam ID:PF15744

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Structure-specific endonuclease subunit SLX4
Gene (Uniprot):SLX4
Chain IDs:E (auth: D)
Chain Length:271
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q8IY92

Polymer Type:polydeoxyribonucleotide
Molecule:DNA strand 1
Chain IDs:C (auth: U)
Chain Length:50
Number of Molecules:1
Biological Source:synthetic construct

Polymer Type:polydeoxyribonucleotide
Molecule:DNA strand 2
Chain IDs:D (auth: V)
Chain Length:50
Number of Molecules:1
Biological Source:synthetic construct

Ligand Molecules

Primary Citation

Molecular basis of XPF-ERCC1 targeting to SLX4-dependent DNA repair pathways

Feng, J, Martin, P.R, Lecot, M, Cronin, N.B, Matthews-Palmer, T, Niedzwiedz, W, Greber, B.J.Show

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Primary Citation of related structures

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