9QCW image
Deposition Date 2025-03-05
Release Date 2025-07-16
Last Version Date 2025-08-06
Entry Detail
PDB ID:
9QCW
Keywords:
Title:
Crystal structure of Rhizobium etli L-asparaginase ReAV K51A mutant
Biological Source:
Source Organism:
Rhizobium etli (Taxon ID: 29449)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.95 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:L-asparaginase II
Gene (Uniprot):ansA
Mutagens:K51A, H238Y
Chain IDs:A, B
Chain Length:373
Number of Molecules:2
Biological Source:Rhizobium etli
Primary Citation

Abstact

The ReAV enzyme from Rhizobium etli, a representative of Class 3 L-asparaginases, is sequentially and structurally different from other known L-asparaginases. This distinctiveness makes ReAV a candidate for novel antileukemic therapies. ReAV is a homodimeric protein, with each subunit containing a highly specific zinc-binding site created by two cysteines, a lysine, and a water molecule. Two Ser-Lys tandems (Ser48-Lys51, Ser80-Lys263) are located in the close proximity of the metal binding site, with Ser48 hypothesized to be the catalytic nucleophile. To further investigate the catalytic process of ReAV, site-directed mutagenesis was employed to introduce alanine substitutions at residues from the Ser-Lys tandems and at Arg47, located near the Ser48-Lys51 tandem. These mutational studies, along with enzymatic assays and X-ray structure determinations, demonstrated that substitution of each of these highly conserved residues abolished the catalytic activity, confirming their essential role in enzyme mechanism.

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Primary Citation of related structures