9QC3 image
Deposition Date 2025-03-04
Release Date 2025-08-13
Last Version Date 2025-08-27
Entry Detail
PDB ID:
9QC3
Keywords:
Title:
CRYSTAL STRUCTURE OF LYSYL-TRNA SYNTHETASE FROM Mycobacterium tuberculosis COMPLEXED WITH L-LYSINE AND INHIBITOR DDD01993593
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.28 Å
R-Value Free:
0.27
R-Value Work:
0.21
Space Group:
P 41 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Lysine--tRNA ligase 1
Gene (Uniprot):lysS1
Chain IDs:A
Chain Length:526
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Primary Citation

Abstact

There is currently a public health crisis due to the rise of multidrug-resistant tuberculosis cases, as well as the rise in the number of deaths from tuberculosis. To achieve the United Nations Sustainable Development Goal of ending the tuberculosis epidemic by 2030, new treatments are urgently required. We previously reported the discovery of 49, a preclinical candidate that acted through inhibition of the Mycobacterium tuberculosis lysyl tRNA synthetase (LysRS). In this report, the full medicinal chemistry program is reviewed from the original hit through to the optimized lead. The work was guided by the first crystal structures of M. tuberculosis LysRS. The physicochemical and pharmacokinetic properties were optimized to afford compounds suitable for evaluation in mouse efficacy models of tuberculosis and with the potential for clinical development.

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Primary Citation of related structures