9QBG image
Deposition Date 2025-03-02
Release Date 2025-08-06
Last Version Date 2025-08-06
Entry Detail
PDB ID:
9QBG
Title:
HER2/ErbB2 extracellular domain (ECD) in extended conformation in complex with trastuzumab (TZB) antibody
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Aequorea victoria (Taxon ID: 6100)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.60 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Receptor tyrosine-protein kinase erbB-2,Green fluorescent protein
Gene (Uniprot):ERBB2, GFP
Mutagens:Del1-22,Del1030-1255,C789S,C805S,C965S.
Chain IDs:A
Chain Length:1311
Number of Molecules:1
Biological Source:Homo sapiens, Aequorea victoria
Ligand Molecules
Primary Citation
Structural analysis of HER2-trastuzumab complex reveals receptor conformational adaptation.
Sci Adv 11 eadu9945 eadu9945 (2025)
PMID: 40712014 DOI: 10.1126/sciadv.adu9945

Abstact

Human epidermal growth factor receptor-2 (HER2) is a receptor tyrosine kinase, associated with a variety of malignant tumors, usually through overexpression, resulting in aberrant signaling. Trastuzumab (TZB), one of the monoclonal antibodies (mAbs) used in combination with chemotherapy, has become a major therapeutic for HER2-overexpressing cancers. Current structural understanding of HER2 and its interactions with other receptors and with different affinity agents has relied on numerous structures of individual domains of HER2. Here, we subjected purified near full-length HER2 to single-particle cryo-electron microscopy (cryo-EM) analysis. Besides the canonical conformation described in previous structural studies, we report a previously unreported conformation of the HER2 extracellular domain that is stabilized upon TZB binding, which might hamper association with HER3, a receptor with which HER2 forms an oncogenic unit. Together, our findings provide insights into the conformational dynamics of the HER2 receptor and the mechanism of action of TZB.

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Primary Citation of related structures