9QAD image
Deposition Date 2025-02-28
Release Date 2025-05-14
Last Version Date 2025-07-02
Entry Detail
PDB ID:
9QAD
Keywords:
Title:
Crystal structure of the SMARCA2 bromodomain bound to a tricyclic pyrimidoindolone inhibitor (compound 17)
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.08 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 31
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Probable global transcription activator SNF2L2
Gene (Uniprot):SMARCA2
Chain IDs:A, B, C
Chain Length:123
Number of Molecules:3
Biological Source:Homo sapiens
Primary Citation
Discovery of Pyrimidoindolones as Novel Family VIII Bromodomain Binders.
Acs Med.Chem.Lett. 16 1073 1079 (2025)
PMID: 40529061 DOI: 10.1021/acsmedchemlett.5c00120

Abstact

Suppression of oncogenic gene expression is an effective strategy for the treatment of cancer. The SWI/SNF (SWItch/Sucrose Non-Fermentable) complex plays an important role in regulating gene activation or repression, and its dysregulation has been linked to aberrant transcription activity in many types of cancer. Targeting the subunits of this complex, such as SMARCA2, SMARCA4, and PBRM1, which are part of the bromodomain family VIII, has significant therapeutic potential. Herein we report the discovery of pyrimidoindolones as a novel series of bromodomain family VIII binders identified through an NMR-based fragment screen. These binders have been optimized to achieve sub-μM affinity for the family VIII proteins SMARCA2, SMARCA4, and PRBM1, with promising physicochemical properties.

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