9Q0W image
Deposition Date 2025-08-13
Release Date 2025-12-10
Last Version Date 2025-12-10
Entry Detail
PDB ID:
9Q0W
Keywords:
Title:
Cryo-EM Structure of HIV-1 BG505DS-SOSIP.664 Env Trimer Bound to DFPH-a.01_10R59P_LC Fab
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
3.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:HIV-1 BG505 DS-SOSIP gp120
Gene (Uniprot):env
Chain IDs:A, C, E
Chain Length:481
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:BG505 DS-SOSIP GP41
Gene (Uniprot):env
Chain IDs:B, D, F
Chain Length:153
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Molecule:DFPH-a.01_10R59P_LC Fab heavy chain
Chain IDs:G, I, K
Chain Length:233
Number of Molecules:3
Biological Source:Macaca
Polymer Type:polypeptide(L)
Molecule:DFPH-a.01_10R59P_LC Fab light chain
Chain IDs:H, J, L
Chain Length:214
Number of Molecules:3
Biological Source:Macaca
Ligand Molecules
Primary Citation
Yeast Display Reveals Plentiful Mutations That Improve Fusion Peptide Vaccine-Elicited Antibodies Beyond 59% HIV-1 Neutralization Breadth.
Vaccines (Basel) 13 ? ? (2025)
PMID: 41295471 DOI: 10.3390/vaccines13111098

Abstact

Background/Objectives: Vaccine elicitation of antibodies with high HIV-1 neutralization breadth is a long-standing goal. Recently, the induction of such antibodies has been achieved at the fusion peptide site of vulnerability. Questions remain, however, as to how much anti-fusion peptide antibodies can be improved and whether their neutralization breadth and potency are sufficient to prevent HIV-1 infection. Methods: Here, we use yeast display coupled with deep mutational screening and biochemical and structural analyses to study the improvement of the best fusion peptide-directed, vaccine-elicited antibody, DFPH_a.01, with an initial 59% breadth. Results: Yeast display identified both single and double mutations that improved recognition of HIV-1 envelope trimers. We characterized two paratope-distal light chain (LC) mutations, S10R and S59P, which together increased breadth to 63%. Biochemical analysis demonstrated DFPH-a.01_10R59P-LC, and its component mutations, to have increased affinity and stability. Cryo-EM structural analysis revealed elbow-angle influencing by S10R-LC and isosteric positioning by S59P-LC as explanations for enhanced breadth, affinity, and stability. Conclusions: These results, along with another antibody with enhanced performance (DFPH-a.01_1G10A56K-LC with 64% breadth), suggest that mutations improving DFPH_a.01 are plentiful, an important vaccine insight.

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Primary Citation of related structures
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