9PYM image
Deposition Date 2025-08-07
Release Date 2025-11-12
Last Version Date 2025-11-19
Entry Detail
PDB ID:
9PYM
Title:
Cryo-EM structure of the isethionate TRAP transporter IseQM from Oleidesulfovibrio alaskensis with bound isethionate
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.98 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Isethionate TRAP transporter permease protein DctMQ
Gene (Uniprot):dctMQ
Chain IDs:A
Chain Length:635
Number of Molecules:1
Biological Source:Oleidesulfovibrio alaskensis G20
Polymer Type:polypeptide(L)
Molecule:Megabody C7HopQ
Chain IDs:B
Chain Length:515
Number of Molecules:1
Biological Source:Helicobacter pylori
Primary Citation
Structural basis of isethionate transport by a TRAP transporter from a sulfate-reducing bacterium.
Structure ? ? ? (2025)
PMID: 41197622 DOI: 10.1016/j.str.2025.10.011

Abstact

Sulfate-reducing bacteria import organosulfur compounds from the environment for anaerobic respiration. They contribute to human disease and are problematic in industrial settings because they produce hydrogen sulfide. Here, we demonstrate how the sulfate-reducing bacterium Oleidesulfovibrio alaskensis imports isethionate, a common organosulfonate, using a tripartite ATP-independent periplasmic (TRAP) transporter (OaIsePQM). The cryo-EM structure of isethionate-bound OaIseQM to 2.98 Å resolution defines the substrate-binding site, two Na+-binding sites, and a distinct fusion helix. Key residues within the OaIseQM substrate-binding site are identified using substitution and proteoliposome assays. Functional studies demonstrate that OaIseQM requires the substrate-binding protein (OaIseP) and a Na+ gradient to drive transport. Modeling of the OaIsePQM complex supports that elevator-type conformational changes are involved in this unique coupled transport process. This work expands our knowledge of the transport of organosulfur compounds in bacteria and establishes OaIsePQM as a new model system for exploring the mechanism of TRAP transporters.

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Primary Citation of related structures
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