9PXO image
Deposition Date 2025-08-06
Release Date 2025-11-26
Last Version Date 2025-11-26
Entry Detail
PDB ID:
9PXO
Keywords:
Title:
Fem-1 homolog B (FEM1B) in complex with VU0023775
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.05 Å
R-Value Free:
0.33
R-Value Work:
0.28
R-Value Observed:
0.28
Space Group:
P 4 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Protein fem-1 homolog B
Gene (Uniprot):FEM1B
Chain IDs:A, B
Chain Length:357
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Nuclear Magnetic Resonance-based fragment screen of the E3 ligase Fem-1 homolog B.
Protein Sci. 34 e70365 e70365 (2025)
PMID: 41229306 DOI: 10.1002/pro.70365

Abstact

Targeted protein degradation using PROTACs (PROteolysis TArgeting Chimeras) has emerged as a transformative therapeutic strategy, largely relying on a small number of E3 ubiquitin ligases such as CRBN and VHL. However, resistance, toxicity, and poor oral bioavailability limit the utility of PROTACs and highlight the need to expand the E3 ligase toolbox. Fem-1 homolog B (FEM1B) is a lesser-known E3 ligase that offers a promising alternative due to its broad expression and ability to recognize diverse degron motifs. Here, we describe the development of a stable construct of FEM1B, the results of a protein-observed NMR-based fragment screen using this construct, and the X-ray structures of some of the fragment hits when bound to the protein. From these results, new PROTACs utilizing FEM1B as the E3 ligase may be discovered, providing an alternative E3 ligase for targeted protein degradation.

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Primary Citation of related structures
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