9PR4 image
Deposition Date 2025-07-23
Release Date 2026-02-18
Last Version Date 2026-02-18
Entry Detail
PDB ID:
9PR4
Keywords:
Title:
In Situ Structure of the Human Mitochondrial Large Subunit 39S in Complex with TACO1
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
2.77 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L32, mitochondrial
Chain IDs:A (auth: 0)
Chain Length:188
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L33, mitochondrial
Chain IDs:B (auth: 1)
Chain Length:65
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L34, mitochondrial
Chain IDs:C (auth: 2)
Chain Length:92
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L35, mitochondrial
Chain IDs:D (auth: 3)
Chain Length:188
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L36, mitochondrial
Chain IDs:E (auth: 4)
Chain Length:103
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L37, mitochondrial
Chain IDs:F (auth: 5)
Chain Length:423
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L38, mitochondrial
Chain IDs:G (auth: 6)
Chain Length:380
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L39, mitochondrial
Chain IDs:H (auth: 7)
Chain Length:338
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L40, mitochondrial
Chain IDs:I (auth: 8)
Chain Length:206
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L41, mitochondrial
Chain IDs:J (auth: 9)
Chain Length:137
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polyribonucleotide
Molecule:16S mitochondrial rRNA
Chain IDs:DB (auth: A)
Chain Length:1558
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polyribonucleotide
Molecule:mitochondrial tRNAVal
Chain IDs:KB (auth: B)
Chain Length:72
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Translational activator of cytochrome c oxidase 1
Chain IDs:K (auth: C)
Chain Length:297
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L2, mitochondrial
Chain IDs:L (auth: D)
Chain Length:305
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L3, mitochondrial
Chain IDs:M (auth: E)
Chain Length:348
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L4, mitochondrial
Chain IDs:N (auth: F)
Chain Length:212
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L12, mitochondrial
Chain IDs:O (auth: G), WA (auth: t), XA (auth: u), YA (auth: v), ZA (auth: w), AB (auth: x), BB (auth: y)
Chain Length:198
Number of Molecules:7
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L9, mitochondrial
Chain IDs:P (auth: H)
Chain Length:158
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L10, mitochondrial
Chain IDs:Q (auth: I)
Chain Length:261
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L11, mitochondrial
Chain IDs:R (auth: J)
Chain Length:123
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL13m
Chain IDs:S (auth: K)
Chain Length:112
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L14, mitochondrial
Chain IDs:T (auth: L)
Chain Length:138
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L15, mitochondrial
Chain IDs:U (auth: M)
Chain Length:296
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L16, mitochondrial
Chain IDs:V (auth: N)
Chain Length:43
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L17, mitochondrial
Chain IDs:W (auth: O)
Chain Length:175
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Mitochondrial inner membrane protein OXA1L
Chain IDs:IB (auth: OX)
Chain Length:435
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L18, mitochondrial
Chain IDs:X (auth: P)
Chain Length:206
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L19, mitochondrial
Chain IDs:Y (auth: Q)
Chain Length:222
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L20, mitochondrial
Chain IDs:Z (auth: R)
Chain Length:196
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L21, mitochondrial
Chain IDs:AA (auth: S)
Chain Length:205
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L22, mitochondrial
Chain IDs:BA (auth: T)
Chain Length:206
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L23, mitochondrial
Chain IDs:CA (auth: U)
Chain Length:153
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L24, mitochondrial
Chain IDs:DA (auth: V)
Chain Length:198
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L27, mitochondrial
Chain IDs:EA (auth: W)
Chain Length:198
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L28, mitochondrial
Chain IDs:FA (auth: X)
Chain Length:256
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L47, mitochondrial
Chain IDs:GA (auth: Y)
Chain Length:198
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L30, mitochondrial
Chain IDs:HA (auth: Z)
Chain Length:161
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L42, mitochondrial
Chain IDs:JB (auth: a)
Chain Length:1558
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L43, mitochondrial
Chain IDs:IA (auth: b)
Chain Length:72
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L44, mitochondrial
Chain IDs:EB (auth: c)
Chain Length:297
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L45, mitochondrial
Chain IDs:JA (auth: d)
Chain Length:305
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L46, mitochondrial
Chain IDs:KA (auth: e)
Chain Length:348
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L48, mitochondrial
Chain IDs:FB (auth: f)
Chain Length:212
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L49, mitochondrial
Chain IDs:LA (auth: g)
Chain Length:198
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L50, mitochondrial
Chain IDs:MA (auth: h)
Chain Length:158
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L51, mitochondrial
Chain IDs:NA (auth: i)
Chain Length:261
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L52, mitochondrial
Chain IDs:OA (auth: j)
Chain Length:123
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein mL53
Chain IDs:PA (auth: k)
Chain Length:112
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L54, mitochondrial
Chain IDs:QA (auth: l)
Chain Length:138
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L55, mitochondrial
Chain IDs:RA (auth: m)
Chain Length:296
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Nascent polypeptide
Chain IDs:SA (auth: n)
Chain Length:43
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein 63, mitochondrial
Chain IDs:TA (auth: o)
Chain Length:175
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Peptidyl-tRNA hydrolase ICT1, mitochondrial
Chain IDs:GB (auth: p)
Chain Length:206
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Growth arrest and DNA damage-inducible proteins-interacting protein 1
Chain IDs:UA (auth: q)
Chain Length:222
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein S18a, mitochondrial
Chain IDs:VA (auth: r)
Chain Length:196
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein S30, mitochondrial
Chain IDs:HB (auth: s)
Chain Length:205
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL1m
Chain IDs:CB (auth: z)
Chain Length:161
Number of Molecules:1
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
1MA DB A modified residue
2MG KB G modified residue
OMG DB G modified residue
OMU DB U modified residue
PSU DB U modified residue
Primary Citation
Structural basis of TACO1-mediated efficient mitochondrial translation.
Nat Commun ? ? ? (2026)
PMID: 41663403 DOI: 10.1038/s41467-026-69156-y

Abstact

Translation elongation is a universally conserved step in protein synthesis, relying on elongation factors that engage the ribosomal L7/L12 stalk to mediate aminoacyl-tRNA delivery, accommodation, and ribosomal translocation. Using in organello cryo-electron microscopy, we reveal how the mitochondrial translation accelerator TACO1 promotes efficient elongation on human mitoribosomes. TACO1 binds the mitoribosomal region typically bound by elongation factor Tu (mtEF-Tu), bridging the large and small subunits via contacts with 16S rRNA, bL12m, A-site tRNA, and uS12m. While active throughout elongation, TACO1 is especially critical when translating polyproline motifs. Its absence prolongs mtEF-Tu residence in A/T states, causes persistent mitoribosomal stalling and premature subunit dissociation. Structural analyses indicate that TACO1 competes with mtEF-Tu for mitoribosome binding, stabilizes A-site tRNA, and enhances peptidyl transfer through a mechanism distinct from EF-P and eIF5A. These findings suggest that bacterial TACO1 orthologs may serve analogous roles, highlighting an evolutionarily conserved strategy for maintaining elongation efficiency during challenging translation events.

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Chemical

Disease

Primary Citation of related structures
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