ISDA: 9PD5

Deposition Date 2025-06-30

Release Date 2026-02-18

Last Version Date 2026-02-18

Entry Detail

PDB ID:

9PD5

Keywords:

DNA BINDING PROTEIN/DNA

Title:

NER dual incision complex - NoF

Biological Source:

Source Organism(s):

Homo sapiens (Taxon ID: 9606)
synthetic construct (Taxon ID: 32630)

Expression System(s):

Spodoptera frugiperda, Escherichia coli

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

5.70 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:TFIIH basal transcription factor complex helicase XPB subunit
Gene (Uniprot):ERCC3
Chain IDs:A
Chain Length:782
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P19447 Pfam ID:PF13625, PF04851, PF16203

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:General transcription and DNA repair factor IIH helicase subunit XPD
Gene (Uniprot):ERCC2
Chain IDs:B
Chain Length:768
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P18074 Pfam ID:PF06733, PF06777, PF13307 EC:3.6.4.12

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:General transcription factor IIH subunit 1
Gene (Uniprot):GTF2H1
Chain IDs:C
Chain Length:548
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P32780 Pfam ID:PF08567, PF03909

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:General transcription factor IIH subunit 4, p52
Gene (Uniprot):GTF2H4
Chain IDs:D
Chain Length:462
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q92759 Pfam ID:PF03849, PF18307

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:General transcription factor IIH subunit 2
Gene (Uniprot):GTF2H2
Chain IDs:E
Chain Length:395
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q13888 Pfam ID:PF04056, PF07975

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:General transcription factor IIH subunit 3
Gene (Uniprot):GTF2H3
Chain IDs:F
Chain Length:308
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q13889 Pfam ID:PF03850

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:General transcription factor IIH subunit 5
Gene (Uniprot):GTF2H5
Chain IDs:G
Chain Length:71
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q6ZYL4 Pfam ID:PF06331

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA repair protein complementing XP-A cells
Gene (Uniprot):XPA
Chain IDs:H (auth: K)
Chain Length:273
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P23025 Pfam ID:PF01286, PF05181

Polymer Type:polydeoxyribonucleotide
Molecule:DNA Cy5
Chain IDs:I (auth: L)
Chain Length:93
Number of Molecules:1
Biological Source:synthetic construct

Polymer Type:polydeoxyribonucleotide
Molecule:DNA
Chain IDs:J (auth: M)
Chain Length:94
Number of Molecules:1
Biological Source:synthetic construct

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA excision repair protein ERCC-5
Gene (Uniprot):ERCC5
Chain IDs:K (auth: S)
Chain Length:1186
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P28715 Pfam ID:PF00752, PF00867

Ligand Molecules