9PD3 image
Deposition Date 2025-06-30
Release Date 2026-02-18
Last Version Date 2026-02-18
Entry Detail
PDB ID:
9PD3
Keywords:
DNA BINDING PROTEIN/DNA
Title:
NER dual incision complex - DuIS
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
synthetic construct (Taxon ID: 32630)
Expression System(s):
Spodoptera frugiperda, Escherichia coli bl21, Homo sapiens
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.30 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
9PD3 validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:TFIIH basal transcription factor complex helicase XPB subunit
Gene (Uniprot):ERCC3
Chain IDs:A
Chain Length:782
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P19447 Pfam ID:PF13625, PF04851, PF16203
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:General transcription and DNA repair factor IIH helicase subunit XPD
Gene (Uniprot):ERCC2
Chain IDs:B
Chain Length:768
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P18074 Pfam ID:PF06733, PF06777, PF13307 EC:3.6.4.12
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:General transcription factor IIH subunit 1
Gene (Uniprot):GTF2H1
Chain IDs:C
Chain Length:548
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P32780 Pfam ID:PF08567, PF03909
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:General transcription factor IIH subunit 4, p52
Gene (Uniprot):GTF2H4
Chain IDs:D
Chain Length:462
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q92759 Pfam ID:PF03849, PF18307
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:General transcription factor IIH subunit 2
Gene (Uniprot):GTF2H2
Chain IDs:E
Chain Length:395
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q13888 Pfam ID:PF04056, PF07975
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:General transcription factor IIH subunit 3
Gene (Uniprot):GTF2H3
Chain IDs:F
Chain Length:308
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q13889 Pfam ID:PF03850
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:General transcription factor IIH subunit 5
Gene (Uniprot):GTF2H5
Chain IDs:G
Chain Length:71
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q6ZYL4 Pfam ID:PF06331
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA repair protein complementing XP-C cells
Gene (Uniprot):XPC
Chain IDs:H
Chain Length:940
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q01831 Pfam ID:PF03835, PF10403, PF10404, PF10405
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA repair protein complementing XP-A cells
Gene (Uniprot):XPA
Chain IDs:I (auth: K)
Chain Length:273
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P23025 Pfam ID:PF01286, PF05181
Polymer Type:polydeoxyribonucleotide
Molecule:DNA lesion strand
Chain IDs:J (auth: L)
Chain Length:51
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:DNA normal strand
Chain IDs:K (auth: M)
Chain Length:53
Number of Molecules:1
Biological Source:synthetic construct
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Replication protein A 70 kDa DNA-binding subunit
Gene (Uniprot):RPA1
Chain IDs:L (auth: N)
Chain Length:616
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P27694 Pfam ID:PF04057, PF01336, PF16900, PF08646
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Replication protein A 32 kDa subunit
Gene (Uniprot):RPA2
Chain IDs:M (auth: O)
Chain Length:270
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P15927 Pfam ID:PF08784
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Replication protein A 14 kDa subunit
Gene (Uniprot):RPA3
Chain IDs:N (auth: P)
Chain Length:121
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P35244 Pfam ID:PF08661
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA repair endonuclease XPF
Gene (Uniprot):ERCC4
Chain IDs:O (auth: Q)
Chain Length:916
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q92889 Pfam ID:PF02732
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA excision repair protein ERCC-1
Gene (Uniprot):ERCC1
Chain IDs:P (auth: R)
Chain Length:295
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P07992 Pfam ID:PF03834, PF00633
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA excision repair protein ERCC-5
Gene (Uniprot):ERCC5
Mutagens:D812N
Chain IDs:Q (auth: S)
Chain Length:1186
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P28715 Pfam ID:PF00752, PF00867
Ligand Molecules
SF4
ZN
Primary Citation
Nucleotide Excision Repair Uncovered by Pre-incision Complex Structures
To Be Published ? ? ? (?)
Primary Citation of related structures
9PD3
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