9P97 image
Deposition Date 2025-06-24
Release Date 2025-09-24
Last Version Date 2025-09-24
Entry Detail
PDB ID:
9P97
Keywords:
Title:
CryoEM structure of the closed integrin alphaEbeta7 bound to fab LF61
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Mus musculus (Taxon ID: 10090)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.92 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Integrin alpha-E
Gene (Uniprot):ITGAE
Chain IDs:A
Chain Length:1176
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Integrin beta-7
Gene (Uniprot):ITGB7
Chain IDs:B
Chain Length:776
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Fab LF61 Heavy Chain
Chain IDs:C (auth: H)
Chain Length:220
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Fab LF61 Light Chain
Chain IDs:D (auth: L)
Chain Length:215
Number of Molecules:1
Biological Source:Mus musculus
Primary Citation
Molecular exaptation by the integrin alpha I domain.
Sci Adv 11 eadx9567 eadx9567 (2025)
PMID: 40929264 DOI: 10.1126/sciadv.adx9567

Abstact

Integrins bind ligands between their alpha (α) and beta (β) subunits and transmit signals through conformational changes. Early in chordate evolution, some α subunits acquired an "inserted" (I) domain that expanded integrin's ligand-binding repertoire but obstructed the ancestral ligand pocket, seemingly blocking conventional integrin activation. Here, we compare cryo-electron microscopy structures of apo and ligand-bound states of the I domain-containing αEβ7 integrin and the I domain-lacking α4β7 integrin to illuminate how the I domain intrinsically mimics an extrinsic ligand to preserve integrin function. We trace the I domain's evolutionary origin to an ancestral collagen-collagen interaction domain, identifying an ancient molecular exaptation that facilitated integrin activation immediately upon I domain insertion. Our analyses reveal the evolutionary and biochemical basis of expanded cellular communication in vertebrates.

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Primary Citation of related structures
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