9P4E image
Deposition Date 2025-06-16
Release Date 2026-01-14
Last Version Date 2026-01-14
Entry Detail
PDB ID:
9P4E
Title:
Crystal Structure of Engineered glutamine binding protein and a Gd-DOTA ligand - no GLN bound
Biological Source:
Source Organism(s):
Escherichia coli (Taxon ID: 562)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.02 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
P 63 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Amino acid ABC transporter substrate-binding protein
Gene (Uniprot):glnH
Chain IDs:A (auth: C)
Chain Length:229
Number of Molecules:1
Biological Source:Escherichia coli
Primary Citation
Development of a glutamine-responsive MRI contrast agent.
Chem Sci ? ? ? (2025)
PMID: 41395538 DOI: 10.1039/d5sc05987a

Abstact

Magnetic resonance imaging (MRI) is widely used to visualize disease, and image quality can be improved through use of MRI contrast agents. Currently available agents produce a signal based solely on spatial distribution, but modern metabolic profiling has uncovered a variety of biomarkers for disease. For example, tumors greatly increase their uptake and catabolism of glutamine (Gln), leading to modified local concentration. Our laboratory previously developed a switchable artificial metalloprotein (swArM) platform in which Gln-binding causes a protein conformational change that modifies the physicochemical environment of an installed metallocofactor. Installing MRI-active metallocofactors within swArMs, we present a proof-of-concept approch toward the development of an analyte-responsive MRI contrast agent. To develop these swArMs, we tested several MRI-active metals (Gd3+, Dy3+), chelating ligands (DOTA, DTPA, NOTA), and attachment sites, as well as the impacts of peripheral mutations on the Gln-responsive signal. In each case, metal content was analytically defined, and Gln-binding affinity was determined by isothermal titration calorimetry. Circular dichroism was used to verify that our swArMs could still undergo the conformational change. X-ray diffraction structures of the apo- and holo-swArMs further revealed that the metallocofactor is significantly solvent-exposed in both conformations, but exhibits additional interactions with the protein in the holo-state coinciding with the observed increase in T 2 relaxivity of ∼60% upon Gln-binding.

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Primary Citation of related structures
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