9OXQ image
Deposition Date 2025-06-04
Release Date 2025-06-18
Last Version Date 2026-02-11
Entry Detail
PDB ID:
9OXQ
Keywords:
Title:
X-ray crystal structure of Beta-Barrel forming peptide macrocycle
Biological Source:
Source Organism(s):
Method Details:
Experimental Method:
Resolution:
1.55 Å
R-Value Free:
0.19
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:MC4H (ORN)WFHSH(ORN)FIH(SAR)H peptide macrocycle
Chain IDs:A, C, E, G
Chain Length:12
Number of Molecules:4
Biological Source:synthetic construct
Polymer Type:polypeptide(L)
Molecule:MC4H (ORN)FIH(SAR)H(ORN)WFHSH peptide macrocycle
Chain IDs:B, D, F, H
Chain Length:12
Number of Molecules:4
Biological Source:synthetic construct
Ligand Molecules
Primary Citation
beta-barrels from short macrocyclic peptides.
Chem.Commun.(Camb.) 62 2304 2308 (2026)
PMID: 41489626 DOI: 10.1039/d5cc06640a

Abstact

β-Barrels are ubiquitous motifs in protein structures, but the fundamental rules underlying their formation are unclear, and their de novo design remains highly challenging. Small peptides that form barrels are especially scarce. Here, we report barrels with the shortest staves (6 residues, ∼60% of previous record) and smallest shear number (S = 4) so far, formed from 12-residue macrocyclic peptides. The miniature barrel has anomalous structural features, demonstrated by solution phase and crystallographic characterization; there is a pronounced and essential backbone kink imparted by an achiral residue, N-methylglycine, as well as four structural water molecules stitching the seams of the barrel. These results provide insights into how extremely short sequences could form barrel assemblies.

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Primary Citation of related structures
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