9OU1 image
Deposition Date 2025-05-28
Release Date 2025-07-02
Last Version Date 2025-07-30
Entry Detail
PDB ID:
9OU1
Keywords:
Title:
Crystal structure of maize AKR4C13 in P21 space group
Biological Source:
Source Organism:
Zea mays (Taxon ID: 4577)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.45 Å
R-Value Free:
0.18
R-Value Work:
0.15
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Aldose reductase, AKR4C13
Gene (Uniprot):AR3
Chain IDs:A, B
Chain Length:327
Number of Molecules:2
Biological Source:Zea mays
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
CSO A CYS modified residue
Primary Citation
Functional genomics and structural insights into maize aldo-keto reductase-4 family: Stress metabolism and substrate specificity in embryos.
J.Biol.Chem. 301 110404 110404 (2025)
PMID: 40544997 DOI: 10.1016/j.jbc.2025.110404

Abstact

Aldo-keto reductases (AKRs) are ubiquitous in nature and are able to reduce a wide range of substrates, from simple sugars to potentially toxic aldehydes. In plants, AKRs are involved in key metabolic processes including reactive aldehyde detoxification. This study aimed to i) delineate a maize gene family encoding Aldo Keto Reductase-4s (AKR4s) ii) help bridge sequence-to-function gaps among them, and iii) focus on a family member implicated in embryo specific stress metabolism. We employed a genome-wide analysis approach to identify maize genes encoding AKR4s, defining and annotating a 15-member gene family that clustered into three subgroups. Expression profiling, validated through wet lab experiments, revealed distinct functional roles: i) AKR4C Zm-1 functions in aldehyde detoxification during stress, ii) AKR4C Zm-2 includes stress-responsive AKRs with diverse substrate affinities, and iii) AKR4A/B Zm-3 contributes to specialized metabolites like phytosiderophores for iron transport. To investigate the impact of sequence variation on function, we characterized ZmAKR4C13, a representative of AKR4C Zm-1. Its mRNA and protein were predominantly localized in embryos, suggesting a specialized role. Recombinant ZmAKR4C13 efficiently reduced methylglyoxal and small aldehydes but showed poor activity toward aldoses larger than four carbons. Crystallographic analysis identified a size constraint at the active site, attributed to the bulkier LEU residue at position 294. Collectively, our results emphasize how subtle modifications in active-site architecture influence AKR substrate specificity. They also demonstrate a potential role of maize ZmAKR4C13 in detoxifying methylglyoxal and other small metabolites that could contribute to stress signaling in embryos.

Legend

Protein

Chemical

Disease

Primary Citation of related structures