9OQ8 image
Deposition Date 2025-05-20
Release Date 2025-07-23
Last Version Date 2025-08-06
Entry Detail
PDB ID:
9OQ8
Title:
Crystal structure of selenomethionine-substituted cyclodehydratase RohQ
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.38 Å
R-Value Free:
0.26
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 41 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RohQ
Chain IDs:A, B, C (auth: E), D (auth: C), E (auth: D)
Chain Length:192
Number of Molecules:5
Biological Source:Pseudomonas brassicacearum
Ligand Molecules
Primary Citation
Structure and Mechanism of the Azomycin Biosynthetic Enzyme RohQ That Catalyzes a Spontaneous Cyclodehydration.
J.Am.Chem.Soc. 147 25117 25122 (2025)
PMID: 40644315 DOI: 10.1021/jacs.5c04341

Abstact

RohQ from the azomycin biosynthetic pathway catalyzes a spontaneous cyclodehydration to form 2-aminoimidazole. Here we report the structure and mechanism of RohQ and use a serendipitously bound imidazole to pinpoint active site residues. We propose that catalysis occurs at the dimeric interface using two key aspartic acid residues for proton transfer steps to accelerate 3 × 104-fold intramolecular cyclization of a guanidino group and aldehyde, releasing water. Our work expands our understanding of de novo emerged enzymes and provides the first structural and mechanistic view of a yet-unexplored protein family.

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Primary Citation of related structures