9OMF image
Deposition Date 2025-05-13
Release Date 2025-06-04
Last Version Date 2025-06-04
Entry Detail
PDB ID:
9OMF
Keywords:
PROTEIN BINDING
Title:
Cryo-EM structure of neddylated PCMTD1-ELOBC-CUL5-RBX2 (N8-CRL5-PCMTD1)
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Mus musculus (Taxon ID: 10090)
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
9.72 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
9OMF validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Protein-L-isoaspartate O-methyltransferase domain-containing protein 1
Gene (Uniprot):PCMTD1
Mutations:N312I
Chain IDs:A
Chain Length:358
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q96MG8 Pfam ID:PF01135
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cullin-5
Gene (Uniprot):CUL5
Chain IDs:B
Chain Length:783
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q93034 Pfam ID:PF00888, PF10557
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RING-box protein 2
Gene (Uniprot):Rnf7
Chain IDs:C
Chain Length:113
Number of Molecules:1
Biological Source:Mus musculus
UniProt ID:Q9WTZ1 Pfam ID:PF12678
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Elongin-B
Gene (Uniprot):ELOB
Chain IDs:D
Chain Length:118
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q15370 Pfam ID:PF00240
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Elongin-C
Gene (Uniprot):ELOC
Chain IDs:E
Chain Length:96
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q15369 Pfam ID:PF03931
Ligand Molecules
NA
Primary Citation
Structural basis for L-isoaspartyl-containing protein recognition by the PCMTD1 cullin-RING E3 ubiquitin ligase
Biorxiv ? ? ? (2025)
DOI: 10.1101/2025.05.21.654933
Primary Citation of related structures
9OMA