ISDA

Deposition Date 2025-05-02

Release Date 2025-11-05

Last Version Date 2025-11-05

Entry Detail

PDB ID:

9OGZ

Keywords:

DNA BINDING PROTEIN

Title:

Cryo-EM analysis of human H2A.Z on Sat2R-P DNA (v2)

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli BL21

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.05 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H3.2
Gene (Uniprot):H3C15, H3C14, H3C13
Chain IDs:A, E
Chain Length:136
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:Q71DI3 Pfam ID:PF00125

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H4
Gene (Uniprot):H4C1, H4C2, H4C3, H4C4, H4C5, H4C6, H4C8, H4C9, H4C11, H4C12, H4C13, H4C14, H4C15, H4C16
Chain IDs:B, F
Chain Length:103
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:P62805 Pfam ID:PF15511

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H2A.Z
Gene (Uniprot):H2AZ1
Chain IDs:C, G
Chain Length:127
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:P0C0S5 Pfam ID:PF00125, PF16211

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H2B type 1-J
Gene (Uniprot):H2BC11
Chain IDs:D, H
Chain Length:126
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:P06899 Pfam ID:PF00125

Polymer Type:polydeoxyribonucleotide
Molecule:Sat2R-P DNA (123-MER)
Chain IDs:I, J
Chain Length:152
Number of Molecules:2
Biological Source:Homo sapiens

Ligand Molecules

Primary Citation

Impacts of DNA methylation on H2A.Z deposition and nucleosome stability

Shih, R.M, Arimura, Y, Konishi, H.A, Funabiki, H.Show

To Be Published ? ? ? (?)

Primary Citation of related structures