9OGZ image
Deposition Date 2025-05-02
Release Date 2025-11-05
Last Version Date 2025-11-05
Entry Detail
PDB ID:
9OGZ
Keywords:
DNA BINDING PROTEIN
Title:
Cryo-EM analysis of human H2A.Z on Sat2R-P DNA (v2)
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Expression System(s):
Escherichia coli bl21, Escherichia coli
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.05 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
9OGZ validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H3.2
Gene (Uniprot):H3C15, H3C14, H3C13
Chain IDs:A, E
Chain Length:136
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:Q71DI3 Pfam ID:PF00125
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H4
Gene (Uniprot):H4C1, H4C2, H4C3, H4C4, H4C5, H4C6, H4C8, H4C9, H4C11, H4C12, H4C13, H4C14, H4C15, H4C16
Chain IDs:B, F
Chain Length:103
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:P62805 Pfam ID:PF15511
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H2A.Z
Gene (Uniprot):H2AZ1
Chain IDs:C, G
Chain Length:127
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:P0C0S5 Pfam ID:PF00125, PF16211
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H2B type 1-J
Gene (Uniprot):H2BC11
Chain IDs:D, H
Chain Length:126
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:P06899 Pfam ID:PF00125
Polymer Type:polydeoxyribonucleotide
Molecule:Sat2R-P DNA (123-MER)
Chain IDs:I, J
Chain Length:152
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
NA
Primary Citation
Impacts of DNA methylation on H2A.Z deposition and nucleosome stability
To Be Published ? ? ? (?)
Primary Citation of related structures
9OGZ
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