ISDA

Deposition Date 2025-04-26

Release Date 2025-06-11

Last Version Date 2025-06-11

Entry Detail

PDB ID:

9ODB

Keywords:

IMMUNE SYSTEM

Title:

Clone 2.1 Fab in complex with chicken IgY CH2 domain (local refinement)

Biological Source:

Source Organism:

Gallus gallus (Taxon ID: 9031)
Mus musculus (Taxon ID: 10090)

Host Organism:

Homo sapiens

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

4.00 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:chicken IgY heavy chain,Ig-like domain-containing protein
Chain IDs:A, F (auth: D)
Chain Length:561
Number of Molecules:2
Biological Source:Gallus gallus

UniProt ID:A0A8V0XLK0 Pfam ID:PF07686, PF07654

Polymer Type:polypeptide(L)
Molecule:Clone 2.1 Fab heavy chain
Chain IDs:B (auth: H), D (auth: B)
Chain Length:239
Number of Molecules:2
Biological Source:Mus musculus

Polymer Type:polypeptide(L)
Molecule:Clone 2.1 Fab light chain
Chain IDs:C (auth: L), E (auth: C)
Chain Length:214
Number of Molecules:2
Biological Source:Mus musculus

Ligand Molecules

NAG

Primary Citation

Replaying germinal center evolution on a quantified affinity landscape

DeWitt, W.S.S, Vora, A.A, Araki, T, Galloway, J.G, Alkutkar, T, Bortolatto, J, Castro, T.B, Dumm, W, Jennings-Schaffer, C, Jia, T, Mesin, L, Ozorowski, G, Pae, J, Ralph, D.K, Bloom, J.D, Nourmohammad, A, Song, Y.S, Ward, A, Starr, T.N, Matsen, F.A, Victora, G.D.Show

Biorxiv ? ? ? (2025)

DOI: 10.1101/2025.06.02.656870

Primary Citation of related structures