9O4P image
Deposition Date 2025-04-08
Release Date 2025-08-13
Last Version Date 2025-08-13
Entry Detail
PDB ID:
9O4P
Title:
Cryo-EM structure of AF9C-GL Fab in complex with influenza virus neuraminidase from A/California/07/2009 (H1N1)
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.55 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Neuraminidase
Gene (Uniprot):NA
Chain IDs:A, B, C, D
Chain Length:478
Number of Molecules:4
Biological Source:Influenza A virus (A/California/07/2009(H1N1))
Polymer Type:polypeptide(L)
Molecule:AF9C-GL heavy chain
Chain IDs:E, F, G, H
Chain Length:126
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:AF9C-GL light chain
Chain IDs:I, J, K, L
Chain Length:107
Number of Molecules:4
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structural basis of broad protection against influenza virus by human antibodies targeting the neuraminidase active site via a recurring motif in CDR H3.
Nat Commun 16 7067 7067 (2025)
PMID: 40750588 DOI: 10.1038/s41467-025-62174-2

Abstact

Influenza viruses evolve rapidly, driving seasonal epidemics and posing global pandemic threats. While neuraminidase (NA) has emerged as a vaccine target, shared molecular features of NA antibody responses are still not well understood. Here, we describe cryo-electron microscopy structures of the broadly protective human antibody DA03E17, which was previously identified from an H1N1-infected donor, in complex with NA from A/H1N1, A/H3N2, and B/Victoria-lineage viruses. DA03E17 targets the highly conserved NA active site using its long CDR H3, which features a DR (Asp-Arg) motif that engages catalytic residues and mimics sialic acid interactions. We further demonstrate that this motif is conserved among several NA active site-targeting antibodies, indicating a common receptor mimicry strategy. We also identified BCR sequences containing this DR motif across all donors in a healthy human repertoire database, suggesting that such precursors may be relatively common and have vaccine targeting potential. Our findings reveal shared molecular features in NA active site-targeting antibodies that can be harnessed to design broad, immune-focused influenza vaccines.

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Primary Citation of related structures
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