9O3F image
Deposition Date 2025-04-07
Release Date 2025-11-12
Last Version Date 2025-11-12
Entry Detail
PDB ID:
9O3F
Title:
Plasmodium falciparum 20S proteasome bound to inhibitor 296
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.28 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Proteasome endopeptidase complex
Gene (Uniprot):PF3D7_0807500
Chain IDs:A, N (auth: O)
Chain Length:260
Number of Molecules:2
Biological Source:Plasmodium falciparum 3D7
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Proteasome endopeptidase complex
Gene (Uniprot):PF3D7_0608500
Chain IDs:B, O (auth: P)
Chain Length:235
Number of Molecules:2
Biological Source:Plasmodium falciparum 3D7
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Proteasome subunit alpha type
Gene (Uniprot):PF3D7_1353800
Chain IDs:C, P (auth: Q)
Chain Length:242
Number of Molecules:2
Biological Source:Plasmodium falciparum 3D7
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Proteasome subunit alpha type
Gene (Uniprot):PF3D7_1353900
Chain IDs:D, Q (auth: R)
Chain Length:241
Number of Molecules:2
Biological Source:Plasmodium falciparum 3D7
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Proteasome subunit alpha type
Gene (Uniprot):PF3D7_0727400
Chain IDs:E, R (auth: S)
Chain Length:256
Number of Molecules:2
Biological Source:Plasmodium falciparum 3D7
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Proteasome endopeptidase complex
Gene (Uniprot):PF3D7_1474800
Chain IDs:F, S (auth: T)
Chain Length:254
Number of Molecules:2
Biological Source:Plasmodium falciparum 3D7
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Proteasome subunit alpha type-3, putative
Gene (Uniprot):PF3D7_0317000
Chain IDs:G, T (auth: U)
Chain Length:252
Number of Molecules:2
Biological Source:Plasmodium falciparum 3D7
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Proteasome subunit beta type-6, putative
Gene (Uniprot):PF3D7_0931800
Chain IDs:H, U (auth: V)
Chain Length:252
Number of Molecules:2
Biological Source:Plasmodium falciparum 3D7
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Proteasome subunit beta
Gene (Uniprot):PF3D7_1328100
Chain IDs:I, V (auth: W)
Chain Length:229
Number of Molecules:2
Biological Source:Plasmodium falciparum 3D7
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Proteasome subunit beta
Gene (Uniprot):PF3D7_0108000
Chain IDs:J, W (auth: X)
Chain Length:218
Number of Molecules:2
Biological Source:Plasmodium falciparum 3D7
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Proteasome subunit beta
Gene (Uniprot):PF3D7_1470900
Chain IDs:K, X (auth: Y)
Chain Length:195
Number of Molecules:2
Biological Source:Plasmodium falciparum 3D7
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Proteasome subunit beta type
Gene (Uniprot):PF3D7_1011400
Chain IDs:L, Y (auth: Z)
Chain Length:211
Number of Molecules:2
Biological Source:Plasmodium falciparum 3D7
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Proteasome subunit beta
Gene (Uniprot):PF3D7_0518300
Chain IDs:AA (auth: M), BA (auth: a)
Chain Length:260
Number of Molecules:2
Biological Source:Plasmodium falciparum 3D7
Polymer Type:polypeptide(L)
Molecule:Proteasome subunit beta
Chain IDs:M (auth: N), Z (auth: b)
Chain Length:235
Number of Molecules:2
Biological Source:Plasmodium falciparum 3D7
Ligand Molecules
Primary Citation
Optimization of Species-Selective Reversible Proteasome Inhibitors for the Treatment of Malaria.
J.Med.Chem. ? ? ? (2025)
PMID: 41148577 DOI: 10.1021/acs.jmedchem.5c02394

Abstact

Malaria remains a critical global health challenge, with increasing resistance to frontline therapies necessitating novel drug targets. The proteasome has emerged as a promising target for antimalarial drug discovery. This study describes efforts to optimize a series of species-selective reversible inhibitors targeting the Plasmodium falciparum 20S proteasome. Starting from the carboxypiperidine scaffold identified through a high-throughput viability screen, we conducted iterative structure-activity relationship studies, leading to the development of highly potent and selective inhibitors with good oral bioavailability. Lead compounds demonstrated nanomolar potency against P. falciparum blood-stage parasites and selective inhibition of the parasite proteasome over the human counterpart. Cryo-EM structural studies confirmed binding at the β5 subunit, while in vivo pharmacokinetic studies identified promising candidates for further development. These findings support proteasome inhibition as a viable strategy for novel antimalarial drug development.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
Feedback Form
Name
Email
Institute
Feedback