9NWW image
Deposition Date 2025-03-24
Release Date 2025-12-17
Last Version Date 2025-12-17
Entry Detail
PDB ID:
9NWW
Keywords:
Title:
Single-particle cryo-EM structure of the first variant of mobilized colistin resistance (MCR-1) in its ligand-bound state
Biological Source:
Source Organism(s):
Escherichia coli (Taxon ID: 562)
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
3.58 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Probable phosphatidylethanolamine transferase Mcr-1
Gene (Uniprot):mcr1
Chain IDs:A (auth: B)
Chain Length:577
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Molecule:Fab (MR6) Light (L) Chain
Chain IDs:B (auth: C)
Chain Length:214
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Fab (MR6) Heavy (H) Chain
Chain IDs:C (auth: D)
Chain Length:235
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Mechanistic basis of antimicrobial resistance mediated by the phosphoethanolamine transferase MCR-1.
Nat Commun 16 10516 10516 (2025)
PMID: 41298376 DOI: 10.1038/s41467-025-65515-3

Abstact

Polymyxins are used to treat infections caused by multidrug-resistant Gram-negative bacteria. They are cationic peptides that target the negatively charged lipid A component of lipopolysaccharides, disrupting the outer membrane and lysing the cell. Polymyxin resistance is conferred by inner-membrane enzymes, such as phosphoethanolamine transferases, which add positively charged phosphoethanolamine to lipid A. Here, we present the structure of MCR-1, a plasmid-encoded phosphoethanolamine transferase, in its liganded form. The phosphatidylethanolamine donor substrate is bound near the active site in the periplasmic domain, and lipid A is bound over 20 Å away, within the transmembrane region. Integrating structural, biochemical, and drug-resistance data with computational analyses, we propose a two-state model in which the periplasmic domain rotates to bring the active site to lipid A, near the preferential phosphate modification site for MCR-1. This enzymatic mechanism may be generally applicable to other phosphoform transferases with large, globular soluble domains.

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