9NRS image
Deposition Date 2025-03-14
Release Date 2026-01-14
Last Version Date 2026-01-28
Entry Detail
PDB ID:
9NRS
Keywords:
Title:
Crystal structure of the H5 influenza virus hemagglutinin from A/duck/France/161108h/2016 (H5N8) clade 2.3.4.4b in complex with O-linked glycan 26
Biological Source:
Source Organism(s):
Influenza A virus (Taxon ID: 11320)
Homo sapiens (Taxon ID: 9606)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hemagglutinin HA1 chain
Gene (Uniprot):HA
Chain IDs:A, C, E
Chain Length:329
Number of Molecules:3
Biological Source:Influenza A virus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hemagglutinin HA2 chain
Gene (Uniprot):HA
Chain IDs:B, D, F
Chain Length:181
Number of Molecules:3
Biological Source:Influenza A virus
Polymer Type:polypeptide(L)
Molecule:Peptide linker
Chain IDs:G (auth: l), H (auth: G), I (auth: H), J (auth: I)
Chain Length:5
Number of Molecules:4
Biological Source:Homo sapiens
Primary Citation
The receptor binding properties of H5Ny influenza A viruses have evolved to bind to avian-type mucin-like O-glycans.
Plos Pathog. 22 e1013812 e1013812 (2026)
PMID: 41557749 DOI: 10.1371/journal.ppat.1013812

Abstact

Highly pathogenic H5Ny influenza A viruses are causing unprecedented, season-independent outbreaks across avian and mammalian species, including dairy cattle, a novel reservoir. The sialoside-binding properties of influenza A hemagglutinin (HA) are strongly related to its ability to infect and transmit between hosts. Mucin-like O-glycans, omnipresent in respiratory tracts, have been understudied as viral receptors due to their complexity. To address this, we synthesized 25 O-linked glycans with diverse sialosides, including modifications by fucosides and sulfates. Our findings reveal that H5Ny 2.3.4.4b viruses bind core 3 sialyl-Lewisx and Sia-Gal-β3GalNAc, O-linked glycans not recognized by classical H5 or other avian viruses. By determining crystal structures, we resolved the structural features of four glycans in an H5 hemagglutinin (HA) from a 2016 2.3.4.4b virus. While these viruses do not bind human-type receptors, their broad receptor specificity enhances binding to human tracheal tissues, suggesting that O-glycan recognition could contribute to the continues spillover of this clade.

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