9NR5 image
Deposition Date 2025-03-14
Release Date 2025-04-23
Last Version Date 2025-04-30
Entry Detail
PDB ID:
9NR5
Keywords:
Title:
Crystal structure of H5 hemagglutinin Q226L mutant from the influenza virus A/black swan/Akita/1/2016 with LSTc
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.52 Å
R-Value Free:
0.25
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Hemagglutinin HA1
Gene (Uniprot):HA
Mutations:Q226L
Chain IDs:A, C, E
Chain Length:324
Number of Molecules:3
Biological Source:Influenza A virus
Polymer Type:polypeptide(L)
Molecule:Hemagglutinin HA2
Gene (Uniprot):HA
Chain IDs:B, D, F
Chain Length:177
Number of Molecules:3
Biological Source:Influenza A virus
Ligand Molecules
Peptide-like Molecules
PRD_900046
Primary Citation
The Q226L mutation can convert a highly pathogenic H5 2.3.4.4e virus to bind human-type receptors.
Proc.Natl.Acad.Sci.USA 122 e2419800122 e2419800122 (2025)
PMID: 40232794 DOI: 10.1073/pnas.2419800122

Abstact

H5Nx viruses continue to wreak havoc in avian and mammalian species worldwide. The virus distinguishes itself by the ability to replicate to high titers and transmit efficiently in a wide variety of hosts in diverse climatic environments. Fortunately, transmission to and between humans is scarce. Yet, if such an event were to occur, it could spark a pandemic as humans are immunologically naïve to H5 viruses. A significant determinant of transmission to and between humans is the ability of the influenza A virus hemagglutinin (HA) protein to shift from an avian-type to a human-type receptor specificity. Here, we demonstrate that a 2016 2.3.4.4e virus HA can convert to human-type receptor binding via a single Q226L mutation, in contrast to a cleavage-modified 2016 2.3.4.4b virus HA. Using glycan arrays, X-ray structural analyses, tissue- and direct glycan binding, we show that L133a Δ and 227Q are vital for this phenotype. Thus, whereas the 2.3.4.4e virus HA only needs a single amino acid mutation, the modified 2016 2.3.4.4b HA was not easily converted to human-type receptor specificity.

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Primary Citation of related structures