9NQD image
Deposition Date 2025-03-12
Release Date 2025-06-25
Last Version Date 2025-10-08
Entry Detail
PDB ID:
9NQD
Title:
Structure of Pseudomonas FapC Biofilm-Forming Functional Amyloid
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.30 Å
Aggregation State:
FILAMENT
Reconstruction Method:
HELICAL
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Functional amyloid subunit FapC
Gene (Uniprot):fapC
Chain IDs:A (auth: 3), B (auth: 4), C (auth: 5), D (auth: 6), E (auth: 7), F (auth: 8), G (auth: 9), H (auth: 0), I (auth: AA), J (auth: AB), K (auth: AC), L (auth: AD)
Chain Length:226
Number of Molecules:12
Biological Source:Pseudomonas fluorescens
Ligand Molecules
Primary Citation
Structural basis of Pseudomonas biofilm-forming functional amyloid FapC formation.
Sci Adv 11 eadx7829 eadx7829 (2025)
PMID: 40991694 DOI: 10.1126/sciadv.adx7829

Abstact

Biofilm-protected Pseudomonas aeruginosa causes chronic infections that are difficult to treat. FapC, the major biofilm-forming functional amyloid in Pseudomonas, is essential for biofilm integrity, yet its structural details remain unresolved. Using an integrative structural biology approach, we combine a solution nuclear magnetic resonance-based structural ensemble of unfolded monomeric FapC, a ~3.3-angstrom-resolution cryo-electron microscopy (cryo-EM) density map of FapC fibril, and all-atom molecular dynamics (MD) simulations to capture the transition from the unfolded to folded monomer to the fibrillar fold, providing a complete structural view of FapC biogenesis. Cryo-EM reveals a unique irregular triple-layer β solenoid cross-β fibril composed of a single protofilament. MD simulations initiated from monomeric and fibrillar FapC mapped structural transitions, offering mechanistic insights into amyloid assembly and disassembly. Understanding FapC reveals how Pseudomonas exploits functional amyloids for biofilm formation, and establishes a structural and mechanistic foundation for developing therapeutics targeting biofilm-related infection and antimicrobial resistance.

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Primary Citation of related structures