ISDA: 9NKT

Deposition Date 2025-03-01

Release Date 2025-09-10

Last Version Date 2025-09-10

Entry Detail

PDB ID:

9NKT

Keywords:

DNA

Title:

[0,8,12P-->13] Shifted tensegrity triangle with an (arm,center,arm) distribution of (0,8,12) base pairs, 1 nt sticky ends, and 5' phosphates containing a semi-junction that becomes left-handed

Biological Source:

Source Organism:

synthetic construct (Taxon ID: 32630)

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

6.42 Å

R-Value Free:

0.39

R-Value Work:

0.31

R-Value Observed:

0.32

Space Group:

H 3

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Macromolecular Entities

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*AP*CP*GP*GP*AP*CP*AP*GP*CP*AP*CP*GP*TP*GP*TP*A)-3')
Chain IDs:A
Chain Length:16
Number of Molecules:1
Biological Source:synthetic construct

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*CP*AP*CP*AP*CP*CP*GP*T)-3')
Chain IDs:B
Chain Length:8
Number of Molecules:1
Biological Source:synthetic construct

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*GP*TP*GP*CP*AP*CP*GP*TP*GP*CP*TP*GP*T)-3')
Chain IDs:C
Chain Length:13
Number of Molecules:1
Biological Source:synthetic construct

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*CP*TP*GP*TP*G)-3')
Chain IDs:D
Chain Length:5
Number of Molecules:1
Biological Source:synthetic construct

Ligand Molecules

Primary Citation

Shifted tensegrity triangles

Horvath, A, Vecchioni, S, Woloszyn, K, Ohayon, Y.P, Sha, R.Show

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