9NJY image
Deposition Date 2025-02-28
Release Date 2025-07-30
Last Version Date 2025-10-08
Entry Detail
PDB ID:
9NJY
Keywords:
Title:
Terminal two domains of ClfA002 with bound Fab of AZD7745
Biological Source:
Source Organism:
Staphylococcus aureus (Taxon ID: 1280)
Mammalia (Taxon ID: 40674)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.58 Å
R-Value Free:
0.21
R-Value Work:
0.19
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Clumping factor A
Gene (Uniprot):clfA
Mutagens:none
Chain IDs:A
Chain Length:302
Number of Molecules:1
Biological Source:Staphylococcus aureus
Polymer Type:polypeptide(L)
Molecule:Human antibody, heavy chain fragment, antigen binding
Chain IDs:B (auth: H)
Chain Length:225
Number of Molecules:1
Biological Source:Mammalia
Polymer Type:polypeptide(L)
Molecule:Human antibody, light chain, antigen binding
Chain IDs:C (auth: L)
Chain Length:214
Number of Molecules:1
Biological Source:Mammalia
Ligand Molecules
Primary Citation
Structure of ClfA002 in Complex With Neutralizing Antibody AZD7745 Provides Insight into Its Broad Neutralization Mechanism in Staphylococcus aureus Infection.
J.Infect.Dis. 232 e421 e430 (2025)
PMID: 40632825 DOI: 10.1093/infdis/jiaf357

Abstact

BACKGROUND Complications due to Staphylococcus aureus infections are a major health concern as current therapies lack broad coverage; therefore, development of a broad neutralizing therapy is critical. We previously showed that a mAb combination comprising suvratoxumab and AZD7745 targeting respectively alpha toxin and clumping factor A (ClfA), two S. aureus virulence factors, provided broad strain coverage in a mouse model. To understand the basis for the broad strain coverage of AZD7745 the epitope was determined. Moreover, we surveyed a global collection of bacteremia isolates to study AZD7745 epitope conservation and neutralizing activity. METHODS AZD7745 epitope was determined from the cocrystal structure of AZD7745 Fab with the N2N3 fibrinogen binding domain of ClfA (at 1.58Å). A geographically diverse collection of 174 S. aureus bacteremia isolates was collected between 2022-2023. Whole genome sequencing was performed to determine the presence of the clfA gene and AZD7745 epitope conservation. AZD7745 neutralizing activity was tested in-vitro against a representative strain of each ClfA variant in a fibrinogen/ClfA binding assay. RESULTS The AZD7745 epitope contains 12 binding residues on the ClfA N3 domain. Among the 174 isolates, we identified 45 ClfA subtypes with 29 presenting amino-acid variations on contact residues. Nonetheless, AZD7745 exhibited neutralizing activity against each subtype. We showed that AZD7745 binding to ClfA N3 domain imposes a conformational change which prevents fibrinogen binding to ClfA. CONCLUSIONS ClfA is ubiquitously present on S. aureus global clinical isolates, and AZD7745 epitope is highly conserved. This suggests that AZD7745 can confer broad coverage against S. aureus.

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Primary Citation of related structures
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