9NII image
Deposition Date 2025-02-26
Release Date 2025-05-21
Last Version Date 2025-12-03
Entry Detail
PDB ID:
9NII
Keywords:
Title:
Crystal structure of citrullinated Tenascin-C restricted PB TCR
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.75 Å
R-Value Free:
0.26
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 2 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PB TCR alpha chain
Chain IDs:A (auth: G), C (auth: A), E (auth: C), G (auth: E)
Chain Length:208
Number of Molecules:4
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PB TCR beta chain
Chain IDs:B (auth: H), D (auth: B), F (auth: D), H (auth: F)
Chain Length:239
Number of Molecules:4
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
The molecular basis of T cell receptor recognition of citrullinated tenascin-C presented by HLA-DR4.
J.Biol.Chem. 301 110326 110326 (2025)
PMID: 40466907 DOI: 10.1016/j.jbc.2025.110326

Abstact

CD4+ T cell autoreactivity against citrullinated (cit) self-epitopes presented by HLA-DRB1 is associated with rheumatoid arthritis (RA) pathogenesis. We understand the molecular bases of T cell receptor (TCR) recognition of cit-fibrinogen, cit-vimentin, and cit-α-enolase epitopes, and the role of citrulline in shaping TCR repertoire usage. Nevertheless, how TCRs recognize other cit-epitopes, including tenascin-C (TNC) and how alternative citrullination positions may modulate the T cell recognition remains unclear. Here, we examined TNC1014,1016cit peptide, which contains citrullination at position P-1 and P2, to study the underlying TCR-HLA-DRB1∗04:01-TNC1014,1016cit molecular interactions. Crystal structure of HLA-DRB1∗04:01TNC1014,1016cit at 2.4 Å resolution revealed a conserved peptide binding register to the established HLA-DRB1∗04:01-peptide structures, where both citrullines protruded upward. Next, we determined the crystal structure of a RA patient-derived TRAV35+/TRBV10-2+ (PB) TCR in complex with HLA-DRB1∗04:01TNC1014,1016cit at 3.2 Å resolution. The CDR3α loop (109VGNTN113) of PB TCR formed a secondary helical conformation at the N-terminus of the peptide binding cleft, allowing extensive interactions between the P-1 and P2 citrullines of TNC1014,1016cit peptide. Surface plasmon resonance, tetramer staining, and CD69 activation assays revealed that the PB TCR did not cross-react to other RA autoantigens, and the P-1-Cit, P2-Cit, and P5-Tyr of TNC1014,1016cit are the key determinants underlying the strict specificity of the PB TCR. Collectively, we provide molecular insight into citrullination in modulating TCR recognition.

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Primary Citation of related structures
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