9NFQ image
Deposition Date 2025-02-21
Release Date 2025-07-09
Last Version Date 2025-07-09
Entry Detail
PDB ID:
9NFQ
Keywords:
DNA Binding Protein/Transferase
Title:
Crystal structure of CRBN-DDB1 and MRT-3486 in complex with NEK7
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Spodoptera frugiperda
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
3.25 Å
R-Value Free:
0.26
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 21 2 21
9NFQ validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA damage-binding protein 1
Gene (Uniprot):DDB1
Chain IDs:A
Chain Length:1140
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q16531 Pfam ID:PF10433, PF03178
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Protein cereblon
Gene (Uniprot):CRBN
Chain IDs:B
Chain Length:442
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q96SW2 Pfam ID:PF02190, PF03226
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Serine/threonine-protein kinase Nek7
Gene (Uniprot):NEK7
Chain IDs:C
Chain Length:304
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q8TDX7 Pfam ID:PF00069
Ligand Molecules
A1BX6
ADP
MG
ZN
Primary Citation
Mining the CRBN Target Space Redefines Rules for Molecular Glue-induced Neosubstrate Recognition
To Be Published ? ? ? (?)
Primary Citation of related structures
9NFQ