ISDA

Deposition Date 2025-02-18

Release Date 2025-06-11

Last Version Date 2025-06-11

Entry Detail

PDB ID:

9NDH

Keywords:

DNA

Title:

[4,8,8,P-1] Shifted tensegrity triangle with an (arm,center,arm) distribution of (4,8,8) base pairs, 1 nt sticky ends, and 5' phosphates

Biological Source:

Source Organism:

synthetic construct (Taxon ID: 32630)

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

5.78 Å

R-Value Free:

0.23

R-Value Work:

0.15

R-Value Observed:

0.16

Space Group:

P 63

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Macromolecular Entities

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*AP*CP*GP*GP*AP*CP*AP*CP*GP*TP*CP*A)-3')
Chain IDs:A
Chain Length:12
Number of Molecules:1
Biological Source:synthetic construct

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*CP*AP*CP*AP*CP*CP*GP*T)-3')
Chain IDs:B
Chain Length:8
Number of Molecules:1
Biological Source:synthetic construct

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*C*TP*GP*AP*CP*GP*TP*GP*TP*GP*CP*TP*C)-3')
Chain IDs:C (auth: D)
Chain Length:13
Number of Molecules:1
Biological Source:synthetic construct

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*GP*GP*AP*GP*CP*TP*GP*TP*G)-3')
Chain IDs:D (auth: X)
Chain Length:9
Number of Molecules:1
Biological Source:synthetic construct

Ligand Molecules

Primary Citation

Shifted tensegrity triangles

Horvath, A, Vecchioni, S, Woloszyn, K, Ohayon, Y.P, Sha, R.Show

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Primary Citation of related structures