ISDA: 9NDB

Deposition Date 2025-02-18

Release Date 2025-04-09

Last Version Date 2025-04-09

Entry Detail

PDB ID:

9NDB

Keywords:

DNA

Title:

[4,7,8-2] Shifted tensegrity triangle with an (arm,center,arm) distribution of (4,7,8) base pairs and 2 nt sticky ends

Biological Source:

Source Organism:

synthetic construct (Taxon ID: 32630)

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

4.07 Å

R-Value Free:

0.17

R-Value Work:

0.16

R-Value Observed:

0.16

Space Group:

H 3

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Macromolecular Entities

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*GP*AP*GP*CP*AP*CP*CP*TP*GP*TP*A)-3')
Chain IDs:A
Chain Length:10
Number of Molecules:1
Biological Source:synthetic construct

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*AP*CP*AP*CP*CP*GP*T)-3')
Chain IDs:B
Chain Length:11
Number of Molecules:1
Biological Source:synthetic construct

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*TP*CP*TP*GP*AP*CP*TP*GP*TP*GP*GP*TP*GP*C)-3')
Chain IDs:C
Chain Length:14
Number of Molecules:1
Biological Source:synthetic construct

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*CP*GP*GP*AP*CP*AP*GP*TP*CP*A)-3')
Chain IDs:D
Chain Length:7
Number of Molecules:1
Biological Source:synthetic construct

Ligand Molecules

Primary Citation

Shifted tensegrity triangles

Horvath, A, Vecchioni, S, Woloszyn, K, Ohayon, Y.P, Sha, R.Show

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