ISDA: 9NBY

Deposition Date 2025-02-14

Release Date 2026-01-21

Last Version Date 2026-01-21

Entry Detail

PDB ID:

9NBY

Keywords:

IMMUNE SYSTEM

Title:

AMC008 v4.2 SOSIP Env trimer in complex with PGT121, VRC01 and 3BC315 Fabs

Biological Source:

Source Organism(s):

Homo sapiens (Taxon ID: 9606)
Human immunodeficiency virus 1 (Taxon ID: 11676)

Expression System(s):

Homo sapiens

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.16 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein gp120
Chain IDs:O (auth: E), Q (auth: A), S (auth: C)
Chain Length:488
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein gp41
Gene (Uniprot):env
Chain IDs:P (auth: F), R (auth: B), T (auth: D)
Chain Length:154
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1

UniProt ID:Q1AII4

Polymer Type:polypeptide(L)
Molecule:PGT121 Fab light chain
Chain IDs:A (auth: G), E (auth: K), K (auth: Q)
Chain Length:211
Number of Molecules:3
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:PGT121 Fab heavy chain
Chain IDs:B (auth: H), F (auth: L), L (auth: R)
Chain Length:235
Number of Molecules:3
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:VRC01 Fab heavy chain
Chain IDs:C (auth: I), G (auth: M), J (auth: P)
Chain Length:224
Number of Molecules:3
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:VRC01 Fab light chain
Chain IDs:D (auth: J), H (auth: N), I (auth: O)
Chain Length:210
Number of Molecules:3
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:3BC315 Fab heavy chain
Chain IDs:M (auth: S)
Chain Length:232
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:3BC315 Fab light chain
Chain IDs:N (auth: T)
Chain Length:216
Number of Molecules:1
Biological Source:Homo sapiens

Ligand Molecules

NAG

Primary Citation

Conformational Landscape of HIV-1 Env from Closed to Fully Open

Cui, J, Du, J, Lin, Z, Pallesen, J.Show

To Be Published ? ? ? (?)

Primary Citation of related structures

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