9NB9 image
Deposition Date 2025-02-13
Release Date 2025-07-09
Last Version Date 2025-07-09
Entry Detail
PDB ID:
9NB9
Keywords:
Title:
Viral protein DP71L in complex with phosphorylated eIF2alpha (NTD) and protein phosphatase 1A (D64A), stabilized by G-actin/DNAseI
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.03 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Eukaryotic translation initiation factor 2 subunit 1
Gene (Uniprot):EIF2S1
Chain IDs:E (auth: A)
Chain Length:186
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Protein DP71L
Gene (Uniprot):Pret-172
Chain IDs:A (auth: B)
Chain Length:71
Number of Molecules:1
Biological Source:African swine fever virus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Serine/threonine-protein phosphatase PP1-alpha catalytic subunit
Gene (Uniprot):PPP1CA
Mutagens:D64A
Chain IDs:B (auth: C)
Chain Length:330
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Actin, alpha skeletal muscle
Gene (Uniprot):ACTA1
Chain IDs:C (auth: D)
Chain Length:377
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Deoxyribonuclease-1
Gene (Uniprot):DNASE1
Chain IDs:D (auth: E)
Chain Length:282
Number of Molecules:1
Biological Source:Bos taurus
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
SEP E SER modified residue
Primary Citation
Harnessing the Evolution of Proteostasis Networks to Reverse Cognitive Dysfunction.
Biorxiv ? ? ? (2025)
PMID: 40568171 DOI: 10.1101/2025.02.28.640897

Abstact

The integrated stress response (ISR) is a highly conserved network essential for maintaining cellular homeostasis and cognitive function. Here, we investigated how persistent ISR activation impacts cognitive performance, primarily focusing on a PPP1R15B R658C genetic variant associated with intellectual disability. By generating a novel mouse model that mimics this human condition, we revealed that this variant destabilizes the PPP1R15B•PP1 phosphatase complex, resulting in chronic ISR activation, impaired protein synthesis, and deficits in long-term memory. Importantly, we found that the cognitive and synaptic deficits in Ppp1r15b R658C mice are directly due to ISR activation. Leveraging insights from evolutionary biology, we characterized DP71L, a viral orthologue of PPP1R15B, through detailed molecular and structural analyses, uncovering its mechanism of action as a potent pan-ISR inhibitor. Remarkably, we found that DP71L not only buffers cognitive decline associated with a wide array of conditions-including Down syndrome, Alzheimer's disease and aging-but also enhances long-term synaptic plasticity and memory in healthy mice. These findings highlight the promise of utilizing evolutionary insight to inform innovative therapeutic strategies.

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Primary Citation of related structures