9N9J image
Deposition Date 2025-02-10
Release Date 2025-11-19
Last Version Date 2025-11-19
Entry Detail
PDB ID:
9N9J
Keywords:
Title:
Structure of a GRP94 folding intermediate engaged with a CCDC134- and FKBP11-bound secretory translocon
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
3.20 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Translocon-associated protein subunit alpha
Gene (Uniprot):SSR1
Chain IDs:A (auth: 5)
Chain Length:286
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Translocon-associated protein subunit beta
Gene (Uniprot):SSR2
Chain IDs:B (auth: 6)
Chain Length:183
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Translocon-associated protein subunit gamma
Gene (Uniprot):SSR3
Chain IDs:C (auth: 7)
Chain Length:185
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Translocon-associated protein subunit delta
Gene (Uniprot):SSR4
Chain IDs:D (auth: 8)
Chain Length:173
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Peptidyl-prolyl cis-trans isomerase FKBP11
Gene (Uniprot):FKBP11
Chain IDs:E (auth: A)
Chain Length:201
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Coiled-coil domain-containing protein 134
Gene (Uniprot):CCDC134
Chain IDs:F (auth: B)
Chain Length:229
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Protein transport protein Sec61 subunit alpha isoform 1
Gene (Uniprot):SEC61A1
Chain IDs:G (auth: D)
Chain Length:476
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Protein transport protein Sec61 subunit beta
Gene (Uniprot):SEC61B
Chain IDs:H (auth: E)
Chain Length:96
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Protein transport protein Sec61 subunit gamma
Gene (Uniprot):SEC61G
Chain IDs:I (auth: F)
Chain Length:68
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Stress-associated endoplasmic reticulum protein 1
Gene (Uniprot):SERP1
Chain IDs:J (auth: G)
Chain Length:66
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A
Gene (Uniprot):STT3A
Chain IDs:K (auth: I)
Chain Length:705
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Oligosaccharyltransferase complex subunit OSTC
Gene (Uniprot):OSTC
Chain IDs:L (auth: J)
Chain Length:149
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4
Gene (Uniprot):OST4
Chain IDs:M (auth: K2)
Chain Length:37
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit TMEM258
Gene (Uniprot):TMEM258
Chain IDs:N (auth: L2)
Chain Length:79
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polyribonucleotide
Molecule:28S ribosomal RNA
Chain IDs:O (auth: L5)
Chain Length:5066
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polyribonucleotide
Molecule:5S ribosomal RNA
Chain IDs:P (auth: L7)
Chain Length:121
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polyribonucleotide
Molecule:5.8S ribosomal RNA
Chain IDs:Q (auth: L8)
Chain Length:157
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L8
Gene (Uniprot):RPL8
Chain IDs:R (auth: LA)
Chain Length:257
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L3
Gene (Uniprot):RPL3
Chain IDs:S (auth: LB)
Chain Length:403
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL4
Gene (Uniprot):RPL4
Chain IDs:T (auth: LC)
Chain Length:427
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL18
Gene (Uniprot):RPL5
Chain IDs:U (auth: LD)
Chain Length:297
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein eL6
Gene (Uniprot):RPL6
Chain IDs:V (auth: LE)
Chain Length:288
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L7
Gene (Uniprot):RPL7
Chain IDs:W (auth: LF)
Chain Length:110
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein eL8
Gene (Uniprot):RPL7A
Chain IDs:X (auth: LG)
Chain Length:266
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL6
Gene (Uniprot):RPL9, RPL9P7, RPL9P8, RPL9P9
Chain IDs:Y (auth: LH)
Chain Length:123
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein uL16-like
Gene (Uniprot):RPL10L
Chain IDs:Z (auth: LI)
Chain Length:214
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL5
Gene (Uniprot):RPL11
Chain IDs:RB (auth: LJ)
Chain Length:97
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein eL13
Gene (Uniprot):RPL13
Chain IDs:AA (auth: LL)
Chain Length:211
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein eL14
Gene (Uniprot):RPL14
Chain IDs:BA (auth: LM)
Chain Length:128
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein eL15
Gene (Uniprot):RPL15
Chain IDs:CA (auth: LN)
Chain Length:25
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL13
Gene (Uniprot):RPL13A
Chain IDs:DA (auth: LO)
Chain Length:106
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL22
Gene (Uniprot):RPL17
Chain IDs:EA (auth: LP)
Chain Length:184
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein eL18
Gene (Uniprot):RPL18
Chain IDs:FA (auth: LQ)
Chain Length:188
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein eL19
Gene (Uniprot):RPL19
Chain IDs:GA (auth: LR)
Chain Length:137
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein eL20
Gene (Uniprot):RPL18A
Chain IDs:HA (auth: LS)
Chain Length:317
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein eL21
Gene (Uniprot):RPL21
Chain IDs:IA (auth: LT)
Chain Length:165
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein eL22
Gene (Uniprot):RPL22
Chain IDs:JA (auth: LU)
Chain Length:128
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL14
Gene (Uniprot):RPL23
Chain IDs:KA (auth: LV)
Chain Length:140
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein eL24
Gene (Uniprot):RPL24
Chain IDs:LA (auth: LW)
Chain Length:157
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL23
Gene (Uniprot):RPL23A
Chain IDs:MA (auth: LX)
Chain Length:156
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL24
Gene (Uniprot):RPL26
Chain IDs:NA (auth: LY)
Chain Length:145
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein eL27
Gene (Uniprot):RPL27
Chain IDs:OA (auth: LZ)
Chain Length:217
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L27a
Gene (Uniprot):RPL27A
Chain IDs:PA (auth: La)
Chain Length:257
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L29
Gene (Uniprot):RPL29
Chain IDs:QA (auth: Lb)
Chain Length:403
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein eL30
Gene (Uniprot):RPL30
Chain IDs:RA (auth: Lc)
Chain Length:427
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein eL31
Gene (Uniprot):RPL31
Chain IDs:SA (auth: Ld)
Chain Length:297
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein eL32
Gene (Uniprot):RPL32
Chain IDs:TA (auth: Le)
Chain Length:288
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein eL33
Gene (Uniprot):RPL35A
Chain IDs:UA (auth: Lf)
Chain Length:110
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein eL34
Gene (Uniprot):RPL34
Chain IDs:VA (auth: Lg)
Chain Length:266
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL29
Gene (Uniprot):RPL35
Chain IDs:WA (auth: Lh)
Chain Length:123
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein eL36
Gene (Uniprot):RPL36
Chain IDs:XA (auth: Li)
Chain Length:214
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein eL37
Gene (Uniprot):RPL37
Chain IDs:YA (auth: Lj)
Chain Length:97
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein eL38
Gene (Uniprot):RPL38
Chain IDs:ZA (auth: Lk)
Chain Length:70
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein eL39
Gene (Uniprot):RPL39
Chain IDs:AB (auth: Ll)
Chain Length:211
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ubiquitin-60S ribosomal protein L40
Gene (Uniprot):UBA52
Chain IDs:BB (auth: Lm)
Chain Length:128
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein eS32
Gene (Uniprot):RPL41
Chain IDs:CB (auth: Ln)
Chain Length:25
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein eL42
Gene (Uniprot):RPL36A
Chain IDs:DB (auth: Lo)
Chain Length:106
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein eL43
Gene (Uniprot):RPL37A
Chain IDs:EB (auth: Lp)
Chain Length:184
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L28
Gene (Uniprot):RPL28
Chain IDs:FB (auth: Lr)
Chain Length:137
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S acidic ribosomal protein P0
Gene (Uniprot):RPLP0
Chain IDs:GB (auth: Ls)
Chain Length:317
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L12
Gene (Uniprot):RPL12
Chain IDs:HB (auth: Lt)
Chain Length:165
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L10a
Gene (Uniprot):RPL10A
Chain IDs:IB (auth: Lz)
Chain Length:217
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1
Gene (Uniprot):DAD1
Chain IDs:JB (auth: M2)
Chain Length:113
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit KCP2
Gene (Uniprot):KRTCAP2
Chain IDs:KB (auth: N)
Chain Length:136
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit
Gene (Uniprot):DDOST
Chain IDs:LB (auth: N2)
Chain Length:456
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1
Gene (Uniprot):RPN1
Chain IDs:MB (auth: O2)
Chain Length:607
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2
Gene (Uniprot):RPN2
Chain IDs:NB (auth: P2)
Chain Length:631
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polyribonucleotide
Molecule:tRNA
Chain IDs:OB (auth: u3)
Chain Length:76
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polyribonucleotide
Molecule:tRNA
Chain IDs:PB (auth: v3)
Chain Length:76
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Endoplasmin
Gene (Uniprot):HSP90B1
Chain IDs:QB (auth: y3)
Chain Length:846
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Structural basis of regulated N-glycosylation at the secretory translocon
Nature ? ? ? (2025)
DOI: 10.1038/s41586-025-09756-8
Primary Citation of related structures
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