9N82 image
Entry Detail
PDB ID:
9N82
EMDB ID:
EMD-49109
Keywords:
LIGASE/TRANSFERASE/DNA
Title:
The ligation (AMP-Lys) complex in the NHEJ pathway
Biological Source:
Source Organism:
Homo sapiens
Host Organism:
Homo sapiens
PDB Version:
Deposition Date:
2025-02-07
Release Date:
2025-04-23
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.30 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
9N82 validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Description:X-ray repair cross-complementing protein 6
Chain IDs:A, M (auth: a)
Chain Length:612
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:P12956 Pfam ID:PF03731, PF02735, PF03730, PF02037
Protein Blast
Polymer Type:polypeptide(L)
Description:X-ray repair cross-complementing protein 5
Chain IDs:B, N (auth: b)
Chain Length:732
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:P13010 Pfam ID:PF03731, PF02735, PF03730, PF08785
Protein Blast
Polymer Type:polypeptide(L)
Description:Non-homologous end-joining factor 1
Chain IDs:C, O (auth: c)
Chain Length:302
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:Q9H9Q4 Pfam ID:PF09302, PF21928
Protein Blast
Polymer Type:polypeptide(L)
Description:DNA repair protein XRCC4
Chain IDs:D, E, P (auth: d), Q (auth: e)
Chain Length:336
Number of Molecules:4
Biological Source:Homo sapiens
UniProt ID:Q13426 Pfam ID:PF06632, PF21924, PF21925
Protein Blast
Polymer Type:polypeptide(L)
Description:DNA ligase 4
Chain IDs:F, R (auth: f)
Chain Length:914
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:P49917 Pfam ID:PF04675, PF01068, PF04679, PF00533, PF11411
Protein Blast
Polymer Type:polypeptide(L)
Description:Protein PAXX
Chain IDs:G, H
Chain Length:218
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:Q9BUH6 Pfam ID:PF15384
Polymer Type:polydeoxyribonucleotide
Description:DNA (39-MER)
Chain IDs:I
Chain Length:68
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polydeoxyribonucleotide
Description:DNA (38-MER)
Chain IDs:J
Chain Length:68
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polydeoxyribonucleotide
Description:DNA (35-MER)
Chain IDs:K
Chain Length:51
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polydeoxyribonucleotide
Description:DNA (34-MER)
Chain IDs:L
Chain Length:51
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
AMP
Primary Citation
The ligation (AMP-Lys) complex in the NHEJ pathway
To Be Published ? ? ? (?)
Primary Citation of related structures
9CQ6