9N69 image
Deposition Date 2025-02-05
Release Date 2025-04-23
Last Version Date 2025-04-23
Entry Detail
PDB ID:
9N69
Title:
Structure of the retron IA complex with HNH nuclease in the "down" orientation
Biological Source:
Source Organism:
Escherichia coli (Taxon ID: 562)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.13 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:AAA family ATPase
Gene (Uniprot):QY721_001703
Mutagens:N-terminal MWSHPQFEK, del native fMet
Chain IDs:A, B, C, D
Chain Length:552
Number of Molecules:4
Biological Source:Escherichia coli
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RNA-directed DNA polymerase
Gene (Uniprot):QY721_001704
Chain IDs:E
Chain Length:311
Number of Molecules:1
Biological Source:Escherichia coli
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:TIGR02646 family protein
Gene (Uniprot):QY721_001702
Chain IDs:F
Chain Length:227
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polydeoxyribonucleotide
Molecule:Retron IA msDNA
Chain IDs:G (auth: H)
Chain Length:162
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polyribonucleotide
Molecule:Retron IA ncRNA
Chain IDs:H (auth: I)
Chain Length:162
Number of Molecules:1
Biological Source:Escherichia coli
Primary Citation
Structural basis of antiphage defense by an ATPase-associated reverse transcriptase.
Biorxiv ? ? ? (2025)
PMID: 40196496 DOI: 10.1101/2025.03.26.645336

Abstact

Reverse transcriptases (RTs) have well-established roles in the replication and spread of retroviruses and retrotransposons. However, recent evidence suggests that RTs have been conscripted by cells for diverse roles in antiviral defense. Here we determine structures of a type I-A retron, which explain how RNA, DNA, RT, HNH-nuclease and four molecules of an SMC-family ATPase assemble into a 364 kDa complex that provides phage defense. We show that phage-encoded nucleases trigger degradation of the retron-associated DNA, leading to disassembly of the retron and activation of the HNH nuclease. The HNH nuclease cleaves tRNA Ser , stalling protein synthesis and arresting viral replication. Taken together, these data reveal diverse and paradoxical roles for RTs in the perpetuation and elimination of genetic parasites.

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