9N0V image
Deposition Date 2025-01-24
Release Date 2025-06-18
Last Version Date 2025-11-05
Entry Detail
PDB ID:
9N0V
Keywords:
Title:
Crystal structure of the HIV capsid hexamer bound to the small molecule long-acting inhibitor, KFA-027
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.98 Å
R-Value Free:
0.30
R-Value Work:
0.27
R-Value Observed:
0.27
Space Group:
H 3
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Capsid protein p24
Gene (Uniprot):gag-pol
Chain IDs:A, B, C, D
Chain Length:220
Number of Molecules:4
Biological Source:Human immunodeficiency virus 1
Ligand Molecules
Primary Citation
Delineating Structural Functionalities of Lenacapavir Amenable to Modifications for Targeting Emerging Drug-Resistant HIV‐1 Capsid Variants.
Acs Med.Chem.Lett. 16 2007 2014 (2025)
PMID: 41089487 DOI: 10.1021/acsmedchemlett.5c00405

Abstact

Lenacapavir (LEN) is a new, first-in-class, long acting, HIV-1 capsid (CA)-targeting inhibitor for treating multidrug-resistant HIV-1 infections. LEN exhibits high potency against all major HIV-1 subtypes including variants resistant to current antiretroviral therapies providing a life-saving opportunity for heavily treatment-experienced adults with multidrug-resistant HIV-1. Despite this, LEN has a relatively low barrier to viral resistance. Clinical trials identified resistance-associated mutations near LEN binding site, with the M66I variant exhibiting highest level of resistance (>3200-fold). These findings necessitate continuing efforts to develop next-generation inhibitors against emerging LEN-resistant mutation. We focused on identifying LEN structural functionalities amenable to modifications and to develop LEN analogs with improved antiviral activity against the M66I mutant. Here, we report a new LEN analog, KFA-027, with substantially improved antiviral activity (EC50 ∼ 444 nM, >20-fold) against M66I variant. Overall, these findings suggest a route for developing next-generation LEN analogs against WT and emerging drug-resistant CA mutations.

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Chemical

Disease

Primary Citation of related structures
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