ISDA

Deposition Date 2025-01-23

Release Date 2025-10-15

Last Version Date 2025-10-15

Entry Detail

PDB ID:

9N07

Keywords:

TRANSCRIPTION

Title:

Mfd-bound E.coli RNA polymerase elongation complex + ADP-BeF3 - L1 state

Biological Source:

Source Organism:

Escherichia coli (Taxon ID: 562)
synthetic construct (Taxon ID: 32630)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.48 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Transcription-repair-coupling factor
Gene (Uniprot):mfd
Chain IDs:A
Chain Length:1166
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:A0A024L3Y3 Pfam ID:PF17757, PF21132, PF02559, PF00270, PF00271, PF03461

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase subunit alpha
Gene (Uniprot):rpoA
Chain IDs:B (auth: G), C (auth: H)
Chain Length:234
Number of Molecules:2
Biological Source:Escherichia coli

UniProt ID:A0A5B9AW69 Pfam ID:PF01193, PF01000

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase subunit beta
Gene (Uniprot):rpoB
Chain IDs:D (auth: I)
Chain Length:1340
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:C3SIA7 Pfam ID:PF04563, PF04561, PF04565, PF10385, PF00562, PF04560

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase subunit beta
Chain IDs:E (auth: J)
Chain Length:1359
Number of Molecules:1
Biological Source:Escherichia coli

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase subunit omega
Gene (Uniprot):rpoZ
Chain IDs:F (auth: K)
Chain Length:91
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:P0A800 Pfam ID:PF01192 EC:2.7.7.6

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (49-MER)
Chain IDs:G (auth: N)
Chain Length:64
Number of Molecules:1
Biological Source:synthetic construct

Polymer Type:polyribonucleotide
Molecule:RNA (5'-R(P*GP*GP*AP*GP*AP*GP*GP*UP*A)-3')
Chain IDs:H (auth: R)
Chain Length:20
Number of Molecules:1
Biological Source:synthetic construct

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (55-MER)
Chain IDs:I (auth: T)
Chain Length:64
Number of Molecules:1
Biological Source:synthetic construct

Ligand Molecules