9MYP image
Deposition Date 2025-01-22
Release Date 2025-08-13
Last Version Date 2025-10-15
Entry Detail
PDB ID:
9MYP
Title:
Structure of Patiria miniata Hop1 chromatin binding region
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.84 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:HORMA domain-containing protein
Chain IDs:A, B (auth: C), C (auth: B)
Chain Length:167
Number of Molecules:3
Biological Source:Patiria miniata
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MLY A LYS modified residue
Primary Citation
Bipartite chromatin recognition by Hop1 from two diverged Holozoa.
Life Sci Alliance 8 ? ? (2025)
PMID: 40829932 DOI: 10.26508/lsa.202503428

Abstact

In meiosis, ploidy reduction is driven by a complex series of DNA breakage and recombination events between homologous chromosomes, orchestrated by meiotic HORMA domain proteins (HORMADs). Meiotic HORMADs possess a central chromatin binding region (CBR) whose architecture varies across eukaryotic groups. Here, we determine high-resolution crystal structures of the meiotic HORMAD CBR from two diverged aquatic Holozoa, Schistosoma mansoni and Patiria miniata, which reveal tightly associated plant homeodomain (PHD) and winged helix-turn-helix (wHTH) domains. We show that PHD-wHTH CBRs bind duplex DNA through their wHTH domains, and identify key residues that disrupt this interaction. Combining experimental and predicted structures, we show that the CBRs' PHDs likely interact with the tail of histone H3, and may discriminate between unmethylated and trimethylated H3 lysine 4. Finally, we show that Holozoa Hop1 CBRs bind nucleosomes in vitro in a bipartite manner involving both the PHD and wHTH domain. Our data reveal how meiotic HORMADs with PHD-wHTH CBRs can bind chromatin and potentially discriminate between chromatin states to drive meiotic recombination to specific chromosomal regions.

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Primary Citation of related structures