9MU9 image
Deposition Date 2025-01-13
Release Date 2025-02-19
Last Version Date 2025-02-19
Entry Detail
PDB ID:
9MU9
Keywords:
TRANSCRIPTION
Title:
Structure of a native Drosophila melanogaster Nucleosome Elongation Complex (Pol II EC-nucleosome). Composite map
Biological Source:
Source Organism:
Drosophila melanogaster (Taxon ID: 7227)
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
7.80 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
9MU9 validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase II subunit RPB1
Gene (Uniprot):Polr2A
Chain IDs:L (auth: A)
Chain Length:100
Number of Molecules:1
Biological Source:Drosophila melanogaster
UniProt ID:P04052 Pfam ID:PF04997, PF00623, PF04983, PF05000, PF04998, PF04992, PF04990
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase II subunit RPB2
Gene (Uniprot):Polr2B
Chain IDs:M (auth: B)
Chain Length:1164
Number of Molecules:1
Biological Source:Drosophila melanogaster
UniProt ID:P08266 Pfam ID:PF04563, PF04561, PF04565, PF04566, PF04567, PF00562, PF04560
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase II subunit RPB3
Gene (Uniprot):Polr2C
Chain IDs:N (auth: C)
Chain Length:106
Number of Molecules:1
Biological Source:Drosophila melanogaster
UniProt ID:O97183 Pfam ID:PF01193, PF01000
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase II subunit RPB5
Gene (Uniprot):Polr2E
Chain IDs:U (auth: E)
Chain Length:210
Number of Molecules:1
Biological Source:Drosophila melanogaster
UniProt ID:Q7JZF5 Pfam ID:PF03871, PF01191
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerases I, II, and III subunit RPABC2
Gene (Uniprot):Polr2F
Chain IDs:O (auth: F)
Chain Length:80
Number of Molecules:1
Biological Source:Drosophila melanogaster
UniProt ID:Q24320 Pfam ID:PF01192
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerases I, II, and III subunit RPABC3
Gene (Uniprot):Polr2H
Chain IDs:P (auth: H)
Chain Length:97
Number of Molecules:1
Biological Source:Drosophila melanogaster
UniProt ID:Q9VNZ3 Pfam ID:PF03870
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase II subunit RPB9
Gene (Uniprot):Polr2I
Chain IDs:Q (auth: I)
Chain Length:116
Number of Molecules:1
Biological Source:Drosophila melanogaster
UniProt ID:P36958 Pfam ID:PF02150, PF01096
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerases I, II, and III subunit RPABC5
Gene (Uniprot):Polr2L
Chain IDs:R (auth: J)
Chain Length:67
Number of Molecules:1
Biological Source:Drosophila melanogaster
UniProt ID:Q9VC49 Pfam ID:PF01194
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase II subunit RPB11
Gene (Uniprot):Polr2J
Chain IDs:S (auth: K)
Chain Length:116
Number of Molecules:1
Biological Source:Drosophila melanogaster
UniProt ID:Q9VJE4 Pfam ID:PF13656
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase II subunit RPB12
Gene (Uniprot):Polr2K
Chain IDs:T (auth: L)
Chain Length:46
Number of Molecules:1
Biological Source:Drosophila melanogaster
UniProt ID:Q6IGE3 Pfam ID:PF03604
Polymer Type:polydeoxyribonucleotide
Molecule:Non-template DNA
Chain IDs:C (auth: N)
Chain Length:163
Number of Molecules:1
Biological Source:Drosophila melanogaster
Polymer Type:polyribonucleotide
Molecule:RNA
Chain IDs:A (auth: R)
Chain Length:10
Number of Molecules:1
Biological Source:Drosophila melanogaster
Polymer Type:polydeoxyribonucleotide
Molecule:Template DNA
Chain IDs:B (auth: T)
Chain Length:174
Number of Molecules:1
Biological Source:Drosophila melanogaster
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H3
Gene (Uniprot):His3, His3:CG31613, His3:CG33803, His3:CG33806, His3:CG33809, His3:CG33812, His3:CG33815, His3:CG33818, His3:CG33821, His3:CG33824, His3:CG33827, His3:CG33830, His3:CG33833, His3:CG33836, His3:CG33839, His3:CG33842, His3:CG33845, His3:CG33848, His3:CG33851, His3:CG33854, His3:CG33857, His3:CG33860, His3:CG33863, His3:CG33866
Chain IDs:H (auth: e), I (auth: a)
Chain Length:100
Number of Molecules:2
Biological Source:Drosophila melanogaster
UniProt ID:P02299 Pfam ID:PF00125
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H4
Gene (Uniprot):His4, His4r, His4:CG31611, His4:CG33869, His4:CG33871, His4:CG33873, His4:CG33875, His4:CG33877, His4:CG33879, His4:CG33881, His4:CG33883, His4:CG33885, His4:CG33887, His4:CG33889, His4:CG33891, His4:CG33893, His4:CG33895, His4:CG33897, His4:CG33899, His4:CG33901, His4:CG33903, His4:CG33905, His4:CG33907, His4:CG33909
Chain IDs:J (auth: f), K (auth: b)
Chain Length:1164
Number of Molecules:2
Biological Source:Drosophila melanogaster
UniProt ID:P84040 Pfam ID:PF15511
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H2A
Gene (Uniprot):His2A, His2A:CG31618, His2A:CG33808, His2A:CG33814, His2A:CG33817, His2A:CG33820, His2A:CG33823, His2A:CG33826, His2A:CG33829, His2A:CG33832, His2A:CG33835, His2A:CG33838, His2A:CG33841, His2A:CG33844, His2A:CG33847, His2A:CG33850, His2A:CG33862, His2A:CG33865
Chain IDs:D (auth: g), E (auth: c)
Chain Length:106
Number of Molecules:2
Biological Source:Drosophila melanogaster
UniProt ID:P84051 Pfam ID:PF00125, PF16211
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H2B
Gene (Uniprot):His2B, His2B:CG17949, His2B:CG33868, His2B:CG33870, His2B:CG33872, His2B:CG33874, His2B:CG33876, His2B:CG33878, His2B:CG33880, His2B:CG33882, His2B:CG33884, His2B:CG33886, His2B:CG33888, His2B:CG33890, His2B:CG33892, His2B:CG33894, His2B:CG33896, His2B:CG33898, His2B:CG33900, His2B:CG33902, His2B:CG33904, His2B:CG33906, His2B:CG33908, His2B:CG33910
Chain IDs:F (auth: h), G (auth: d)
Chain Length:97
Number of Molecules:2
Biological Source:Drosophila melanogaster
UniProt ID:P02283 Pfam ID:PF00125
Ligand Molecules
ZN
Primary Citation
Structural Characterization of Native RNA Polymerase II Transcription Complexes in Drosophila melanogaster
To Be Published ? ? ? (?)
Primary Citation of related structures
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