ISDA

Entry Detail

PDB ID:

9MU9

EMDB ID:

EMD-48626

Keywords:

TRANSCRIPTION

Title:

Structure of a native Drosophila melanogaster Nucleosome Elongation Complex (Pol II EC-nucleosome). Composite map

Biological Source:

Source Organism:

Drosophila melanogaster

PDB Version:

Deposition Date:

2025-01-13

Release Date:

2025-02-19

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

7.80 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerase II subunit RPB1
Chain IDs:L (auth: A)
Chain Length:100
Number of Molecules:1
Biological Source:Drosophila melanogaster

UniProt ID:P04052 Pfam ID:PF04997, PF00623, PF04983, PF05000, PF04998, PF04992, PF04990

Protein Blast

Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerase II subunit RPB2
Chain IDs:M (auth: B)
Chain Length:1164
Number of Molecules:1
Biological Source:Drosophila melanogaster

UniProt ID:P08266 Pfam ID:PF04563, PF04561, PF04565, PF04566, PF04567, PF00562, PF04560

Protein Blast

Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerase II subunit RPB3
Chain IDs:N (auth: C)
Chain Length:106
Number of Molecules:1
Biological Source:Drosophila melanogaster

UniProt ID:O97183 Pfam ID:PF01193, PF01000

Protein Blast

Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerase II subunit RPB5
Chain IDs:U (auth: E)
Chain Length:210
Number of Molecules:1
Biological Source:Drosophila melanogaster

UniProt ID:Q7JZF5 Pfam ID:PF03871, PF01191

Protein Blast

Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerases I, II, and III subunit RPABC2
Chain IDs:O (auth: F)
Chain Length:80
Number of Molecules:1
Biological Source:Drosophila melanogaster

UniProt ID:Q24320 Pfam ID:PF01192

Protein Blast

Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerases I, II, and III subunit RPABC3
Chain IDs:P (auth: H)
Chain Length:97
Number of Molecules:1
Biological Source:Drosophila melanogaster

UniProt ID:Q9VNZ3 Pfam ID:PF03870

Protein Blast

Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerase II subunit RPB9
Chain IDs:Q (auth: I)
Chain Length:116
Number of Molecules:1
Biological Source:Drosophila melanogaster

UniProt ID:P36958 Pfam ID:PF02150, PF01096

Protein Blast

Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerases I, II, and III subunit RPABC5
Chain IDs:R (auth: J)
Chain Length:67
Number of Molecules:1
Biological Source:Drosophila melanogaster

UniProt ID:Q9VC49 Pfam ID:PF01194

Protein Blast

Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerase II subunit RPB11
Chain IDs:S (auth: K)
Chain Length:116
Number of Molecules:1
Biological Source:Drosophila melanogaster

UniProt ID:Q9VJE4 Pfam ID:PF13656

Protein Blast

Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerase II subunit RPB12
Chain IDs:T (auth: L)
Chain Length:46
Number of Molecules:1
Biological Source:Drosophila melanogaster

UniProt ID:Q6IGE3 Pfam ID:PF03604

Polymer Type:polydeoxyribonucleotide
Description:Non-template DNA
Chain IDs:C (auth: N)
Chain Length:163
Number of Molecules:1
Biological Source:Drosophila melanogaster

Polymer Type:polyribonucleotide
Description:RNA
Chain IDs:A (auth: R)
Chain Length:10
Number of Molecules:1
Biological Source:Drosophila melanogaster

Polymer Type:polydeoxyribonucleotide
Description:Template DNA
Chain IDs:B (auth: T)
Chain Length:174
Number of Molecules:1
Biological Source:Drosophila melanogaster

Protein Blast

Polymer Type:polypeptide(L)
Description:Histone H3
Chain IDs:H (auth: e), I (auth: a)
Chain Length:100
Number of Molecules:2
Biological Source:Drosophila melanogaster

UniProt ID:P02299 Pfam ID:PF00125

Protein Blast

Polymer Type:polypeptide(L)
Description:Histone H4
Chain IDs:J (auth: f), K (auth: b)
Chain Length:1164
Number of Molecules:2
Biological Source:Drosophila melanogaster

UniProt ID:P84040 Pfam ID:PF15511

Protein Blast

Polymer Type:polypeptide(L)
Description:Histone H2A
Chain IDs:D (auth: g), E (auth: c)
Chain Length:106
Number of Molecules:2
Biological Source:Drosophila melanogaster

UniProt ID:P84051 Pfam ID:PF00125, PF16211

Protein Blast

Polymer Type:polypeptide(L)
Description:Histone H2B
Chain IDs:F (auth: h), G (auth: d)
Chain Length:97
Number of Molecules:2
Biological Source:Drosophila melanogaster

UniProt ID:P02283 Pfam ID:PF00125

Ligand Molecules

Primary Citation

Structural Characterization of Native RNA Polymerase II Transcription Complexes in Drosophila melanogaster

Venette-Smith, N.L, Vishwakarma, R.K, Dollinger, R, Schultz, J, Venkatakrishnan, V, Babitzke, P, Anand, G, Gilmour, D.S, Armache, J.-P, Murakami, K.Show

To Be Published ? ? ? (?)

Primary Citation of related structures