ISDA

Deposition Date 2025-01-13

Release Date 2025-05-14

Last Version Date 2025-05-14

Entry Detail

PDB ID:

9MU8

Keywords:

TRANSCRIPTION

Title:

Structure of a native Drosophila melanogaster Pol II Elongation Complex without Rpb4/Rpb7 stalk

Biological Source:

Source Organism:

Drosophila melanogaster (Taxon ID: 7227)

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.37 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase II subunit RPB1
Gene (Uniprot):Polr2A
Chain IDs:A
Chain Length:1470
Number of Molecules:1
Biological Source:Drosophila melanogaster

UniProt ID:P04052 Pfam ID:PF04997, PF00623, PF04983, PF05000, PF04998, PF04992, PF04990

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase II subunit RPB2
Gene (Uniprot):Polr2B
Chain IDs:B
Chain Length:1164
Number of Molecules:1
Biological Source:Drosophila melanogaster

UniProt ID:P08266 Pfam ID:PF04563, PF04561, PF04565, PF04566, PF04567, PF00562, PF04560

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase II subunit RPB3
Gene (Uniprot):Polr2C
Chain IDs:C
Chain Length:269
Number of Molecules:1
Biological Source:Drosophila melanogaster

UniProt ID:O97183 Pfam ID:PF01193, PF01000

Protein Blast

Polymer Type:polypeptide(L)
Molecule:RPB5 homolog
Gene (Uniprot):Polr2E
Chain IDs:M (auth: E)
Chain Length:210
Number of Molecules:1
Biological Source:Drosophila melanogaster

UniProt ID:Q7JZF5 Pfam ID:PF03871, PF01191

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerases I, II, and III subunit RPABC2
Gene (Uniprot):Polr2F
Chain IDs:D (auth: F)
Chain Length:84
Number of Molecules:1
Biological Source:Drosophila melanogaster

UniProt ID:Q24320 Pfam ID:PF01192

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerases I, II, and III subunit RPABC3
Gene (Uniprot):Polr2H
Chain IDs:E (auth: H)
Chain Length:147
Number of Molecules:1
Biological Source:Drosophila melanogaster

UniProt ID:Q9VNZ3 Pfam ID:PF03870

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase II subunit RPB9
Gene (Uniprot):Polr2I
Chain IDs:F (auth: I)
Chain Length:116
Number of Molecules:1
Biological Source:Drosophila melanogaster

UniProt ID:P36958 Pfam ID:PF02150, PF01096

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerases I, II, and III subunit RPABC5
Gene (Uniprot):Polr2L
Chain IDs:G (auth: J)
Chain Length:67
Number of Molecules:1
Biological Source:Drosophila melanogaster

UniProt ID:Q9VC49 Pfam ID:PF01194

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase II subunit RPB11
Gene (Uniprot):Polr2J
Chain IDs:H (auth: K)
Chain Length:116
Number of Molecules:1
Biological Source:Drosophila melanogaster

UniProt ID:Q9VJE4 Pfam ID:PF13656

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase II subunit RPB12
Gene (Uniprot):Polr2K
Chain IDs:I (auth: L)
Chain Length:46
Number of Molecules:1
Biological Source:Drosophila melanogaster

UniProt ID:Q6IGE3 Pfam ID:PF03604

Polymer Type:polydeoxyribonucleotide
Molecule:Non-template DNA
Chain IDs:L (auth: N)
Chain Length:39
Number of Molecules:1
Biological Source:Drosophila melanogaster

Polymer Type:polyribonucleotide
Molecule:RNA
Chain IDs:J (auth: R)
Chain Length:10
Number of Molecules:1
Biological Source:Drosophila melanogaster

Polymer Type:polydeoxyribonucleotide
Molecule:Template DNA
Chain IDs:K (auth: T)
Chain Length:50
Number of Molecules:1
Biological Source:Drosophila melanogaster

Ligand Molecules

Primary Citation

Structural Characterization of Native RNA Polymerase II Transcription Complexes in Drosophila melanogaster

Venette-Smith, N.L, Vishwakarma, R.K, Dollinger, R, Schultz, J, Venkatakrishnan, V, Babitzke, P, Anand, G, Gilmour, D.S, Armache, J.-P, Murakami, K.Show

To Be Published ? ? ? (?)

Primary Citation of related structures