ISDA

Deposition Date 2025-01-13

Release Date 2025-02-19

Last Version Date 2025-02-19

Entry Detail

PDB ID:

9MU5

Keywords:

GENE REGULATION

Title:

Structure of a native Drosophila melanogaster hexameric nucleosome

Biological Source:

Source Organism:

Drosophila melanogaster (Taxon ID: 7227)

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

6.30 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (133-MER)
Chain IDs:G (auth: N)
Chain Length:133
Number of Molecules:1
Biological Source:Drosophila melanogaster

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (133-MER)
Chain IDs:H (auth: T)
Chain Length:133
Number of Molecules:1
Biological Source:Drosophila melanogaster

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H3
Gene (Uniprot):His3, His3:CG31613, His3:CG33803, His3:CG33806, His3:CG33809, His3:CG33812, His3:CG33815, His3:CG33818, His3:CG33821, His3:CG33824, His3:CG33827, His3:CG33830, His3:CG33833, His3:CG33836, His3:CG33839, His3:CG33842, His3:CG33845, His3:CG33848, His3:CG33851, His3:CG33854, His3:CG33857, His3:CG33860, His3:CG33863, His3:CG33866
Chain IDs:C (auth: a), D (auth: e)
Chain Length:92
Number of Molecules:2
Biological Source:Drosophila melanogaster

UniProt ID:P02299 Pfam ID:PF00125

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H4
Gene (Uniprot):His4, His4r, His4:CG31611, His4:CG33869, His4:CG33871, His4:CG33873, His4:CG33875, His4:CG33877, His4:CG33879, His4:CG33881, His4:CG33883, His4:CG33885, His4:CG33887, His4:CG33889, His4:CG33891, His4:CG33893, His4:CG33895, His4:CG33897, His4:CG33899, His4:CG33901, His4:CG33903, His4:CG33905, His4:CG33907, His4:CG33909
Chain IDs:E (auth: b), F (auth: f)
Chain Length:80
Number of Molecules:2
Biological Source:Drosophila melanogaster

UniProt ID:P84040 Pfam ID:PF15511

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H2A
Gene (Uniprot):His2A, His2A:CG31618, His2A:CG33808, His2A:CG33814, His2A:CG33817, His2A:CG33820, His2A:CG33823, His2A:CG33826, His2A:CG33829, His2A:CG33832, His2A:CG33835, His2A:CG33838, His2A:CG33841, His2A:CG33844, His2A:CG33847, His2A:CG33850, His2A:CG33862, His2A:CG33865
Chain IDs:A (auth: g)
Chain Length:105
Number of Molecules:1
Biological Source:Drosophila melanogaster

UniProt ID:P84051 Pfam ID:PF00125, PF16211

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H2B
Gene (Uniprot):His2B, His2B:CG17949, His2B:CG33868, His2B:CG33870, His2B:CG33872, His2B:CG33874, His2B:CG33876, His2B:CG33878, His2B:CG33880, His2B:CG33882, His2B:CG33884, His2B:CG33886, His2B:CG33888, His2B:CG33890, His2B:CG33892, His2B:CG33894, His2B:CG33896, His2B:CG33898, His2B:CG33900, His2B:CG33902, His2B:CG33904, His2B:CG33906, His2B:CG33908, His2B:CG33910
Chain IDs:B (auth: h)
Chain Length:97
Number of Molecules:1
Biological Source:Drosophila melanogaster

UniProt ID:P02283 Pfam ID:PF00125

Ligand Molecules

Primary Citation

Structural Characterization of Native RNA Polymerase II Transcription Complexes in Drosophila melanogaster

Venette-Smith, N.L, Vishwakarma, R.K, Dollinger, R, Schultz, J, Venkatakrishnan, V, Babitzke, P, Anand, G, Gilmour, D.S, Armache, J.-P, Murakami, K.Show

To Be Published ? ? ? (?)

Primary Citation of related structures