9MU2 image
Deposition Date 2025-01-13
Release Date 2025-06-11
Last Version Date 2025-06-11
Entry Detail
PDB ID:
9MU2
EMDB ID:
Title:
SaPI1 neck structure with DNA, tail completion protein, and tape measure protein
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.54 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Head-tail connector protein
Gene (Uniprot):SA12_031
Chain IDs:A, B, G, H, S, T, Y, Z, EA (auth: e), FA (auth: f), KA (auth: k), LA (auth: l)
Chain Length:100
Number of Molecules:12
Biological Source:Staphylococcus phage 80alpha
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:adaptor
Chain IDs:C, I, U, AA (auth: a), GA (auth: g), MA (auth: m)
Chain Length:100
Number of Molecules:6
Biological Source:Staphylococcus phage 80alpha
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DUF3168 domain-containing protein
Chain IDs:D, J, V, BA (auth: b), HA (auth: h), NA (auth: n)
Chain Length:110
Number of Molecules:6
Biological Source:Staphylococcus phage 80alpha
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Major tail protein
Chain IDs:E, F, K, L, W, X, CA (auth: c), DA (auth: d), IA (auth: i), JA (auth: j), OA (auth: o), PA (auth: p)
Chain Length:193
Number of Molecules:12
Biological Source:Staphylococcus phage 80alpha
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Tape measure protein
Chain IDs:M, N, O
Chain Length:1154
Number of Molecules:3
Biological Source:Staphylococcus phage 80alpha
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:HK97 gp10 family phage protein
Chain IDs:P
Chain Length:193
Number of Molecules:1
Biological Source:Staphylococcus phage 80alpha
Polymer Type:polydeoxyribonucleotide
Molecule:DNA, 5'-3'
Chain IDs:Q
Chain Length:16181
Number of Molecules:1
Biological Source:Staphylococcus phage 80alpha
Polymer Type:polydeoxyribonucleotide
Molecule:DNA, 3'-5'
Chain IDs:R
Chain Length:16181
Number of Molecules:1
Biological Source:Staphylococcus phage 80alpha
Ligand Molecules
Primary Citation
Structure of the Staphylococcus aureus bacteriophage 80 alpha neck shows details of the DNA, tail completion protein, and tape measure protein.
Structure ? ? ? (2025)
PMID: 40174589 DOI: 10.1016/j.str.2025.03.007

Abstact

The Staphylococcus aureus pathogenicity islands (SaPIs), including SaPI1, are a type of mobile genetic elements (MGEs) that are mobilized at high frequency by "helper" bacteriophages, such as 80α, leading to packaging of the SaPI genomes into virions made from helper-encoded structural proteins. 80α and SaPI1 virions consist of an icosahedral head connected via a portal vertex to a long, non-contractile tail. A connector or "neck" forms the interface between the tail and the head. Here, we have determined the high-resolution structure of the neck section of SaPI1 virions, including the dodecameric portal and head-tail-connector proteins, and the hexameric head-tail joining, tail terminator and major tail proteins. We also resolved the DNA, the tail completion protein (TCP), and the tape measure protein (TMP) inside the tail, features that have not previously been observed at high resolution. Our study provides insights into the assembly and infection process in this important group of MGEs.

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Chemical

Disease

Primary Citation of related structures
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