ISDA: 9MR2

Deposition Date 2025-01-06

Release Date 2025-11-26

Last Version Date 2025-11-26

Entry Detail

PDB ID:

9MR2

Keywords:

VIRUS

Title:

SARS-CoV-2 S2 monomer in complex with NICA01A-1401 Fab

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)
Severe acute respiratory syndrome coronavirus 2 (Taxon ID: 2697049)

Host Organism:

Homo sapiens

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.79 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Polymer Type:polypeptide(L)
Molecule:NICA01A-1401 Fab Heavy chain
Chain IDs:A
Chain Length:122
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:NICA01A-1401 Fab Light chain
Chain IDs:B
Chain Length:110
Number of Molecules:1
Biological Source:Homo sapiens

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Spike protein S2
Gene (Uniprot):S
Mutagens:F817P, G880C, F888C, A892P, A899P, A942P, T912P, K986P, V987P, T1117C, D1139C
Chain IDs:C
Chain Length:474
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2

UniProt ID:P0DTC2 Pfam ID:PF01601

Ligand Molecules

Primary Citation

Common cold embecovirus imprinting primes broadly neutralizing antibody responses to SARS-CoV-2 S2.

Changrob, S, Yasuhara, A, Park, S, Bangaru, S, Li, L, Troxell, C.A, Halfmann, P.J, Erickson, S.A, Catanzaro, N.J, Yuan, M, Zhou, P, Huang, M, Wilbanks, G.D, McGrath, J.J.C, Singh, G, Nelson, S.A, Fu, Y, Zheng, N.Y, Carayannopoulos, S.M, Dugan, H.L, Shaw, D.G, Stamper, C.T, Madariaga, M.L.L, Krammer, F, Andrabi, R, Burton, D.R, Ward, A.B, Wilson, I.A, Kawaoka, Y, Wilson, P.C.Show

J.Exp.Med. 222 ? ? (2025)

PMID: 41066082 DOI: 10.1084/jem.20251146

Primary Citation of related structures

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