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9MR2 image
Deposition Date 2025-01-06
Release Date 2025-11-26
Last Version Date 2025-11-26
Entry Detail
PDB ID:
9MR2
Keywords:
Title:
SARS-CoV-2 S2 monomer in complex with NICA01A-1401 Fab
Method Details:
Experimental Method:
Resolution:
3.79 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:NICA01A-1401 Fab Heavy chain
Chain IDs:A
Chain Length:122
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:NICA01A-1401 Fab Light chain
Chain IDs:B
Chain Length:110
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Spike protein S2
Gene (Uniprot):S
Mutagens:F817P, G880C, F888C, A892P, A899P, A942P, T912P, K986P, V987P, T1117C, D1139C
Chain IDs:C
Chain Length:474
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2
Ligand Molecules
Primary Citation

Abstact

The S2 subunit of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) spike is highly conserved across coronavirus strains and therefore is a potential pan-coronavirus vaccine target. However, antibodies targeting this region are typically non-neutralizing. We report herein that S2-targeting antibodies from patients who recovered from SARS-CoV-2 infection bound only closely related sarbecovirus subgenus strains and, like most known S2 antibodies, none of these were neutralizing. In contrast, first-exposure, severe acutely infected COVID-19 patients predominantly induced back-boosted antibody-secreting cells imprinted against past common cold coronavirus strain OC43 that were cross-reactive to as many as five subgenera of betacoronavirus strains and gave rise to antibodies that were neutralizing and protective. The antibodies targeted two different sites: one defined by competition with stem helix antibodies, and the second to an underdescribed epitope at the apex of S2. These findings suggest that S2-targeted vaccines could strategically exploit controlled OC43 priming followed by SARS-CoV-2 boosting to enhance the breadth and quality of protective antibody responses.

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Protein

Chemical

Disease

Primary Citation of related structures
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