9MMR image
Deposition Date 2024-12-20
Release Date 2025-09-10
Last Version Date 2025-10-08
Entry Detail
PDB ID:
9MMR
Keywords:
Title:
Cryo-EM structure of CRAF/MEK1/14-3-3 complex (open monomer conformation, CRAF Y340D/Y341D mutant)
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Spodoptera exigua (Taxon ID: 7107)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.90 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RAF proto-oncogene serine/threonine-protein kinase
Gene (Uniprot):RAF1
Mutagens:Q156R, Y340D, Y341D, D587E
Chain IDs:A
Chain Length:681
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dual specificity mitogen-activated protein kinase kinase 1
Gene (Uniprot):MAP2K1
Mutagens:S218A, S222A
Chain IDs:B
Chain Length:415
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:14-3-3 protein zeta
Chain IDs:C, D
Chain Length:247
Number of Molecules:2
Biological Source:Spodoptera exigua
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
SEP A SER modified residue
Primary Citation
Cryo-EM structures of CRAF/MEK1/14-3-3 complexes in autoinhibited and open-monomer states reveal features of RAF regulation.
Nat Commun 16 8150 8150 (2025)
PMID: 40890113 DOI: 10.1038/s41467-025-63227-2

Abstact

CRAF (RAF1) is one of three RAF-family kinases that initiate MAP kinase signaling in response to activated RAS and is essential for oncogenic signaling from mutant KRAS. Like BRAF, CRAF is regulated by 14-3-3 engagement and by intramolecular autoinhibitory interactions of its N-terminal regulatory region. Unlike BRAF, it is thought to require tyrosine phosphorylation in its N-terminal acidic (NtA) motif for full catalytic activation. Here we describe cryo-EM reconstructions of full-length CRAF in complex with MEK1 and a 14-3-3 dimer. These structures reveal a fully autoinhibited conformation analogous to that observed for BRAF and two "open monomer" states in which the inhibitory interactions of the CRD and 14-3-3 dimer are released or rearranged, but the kinase domain remains inactive. Structure-function studies of the NtA motif indicate that phosphorylation or acidic mutations in this segment increase catalytic activity by destabilizing the inactive conformation of the kinase domain. Collectively, these studies provide a structural foundation for understanding the shared and unique regulatory features of CRAF and will inform efforts to selectively block CRAF signaling in cancer.

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