9MLC image
Deposition Date 2024-12-19
Release Date 2026-01-21
Last Version Date 2026-01-21
Entry Detail
PDB ID:
9MLC
Keywords:
TRANSCRIPTION
Title:
Pol II-DSIF-SPT6-PAF1c-TFIIS-IWS1-ELOF1-LEDGF-nucleosome activated elongation complex Composite map T
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Xenopus laevis (Taxon ID: 8355)
synthetic construct (Taxon ID: 32630)
Sus scrofa (Taxon ID: 9823)
Expression System(s):
Trichoplusia ni, Escherichia coli
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
2.40 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
9MLC validation report
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase II subunit RPB1
Chain IDs:A
Chain Length:1984
Number of Molecules:1
Biological Source:Sus scrofa
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase subunit beta
Gene (Uniprot):POLR2B
Chain IDs:B
Chain Length:1300
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:I3LGP4 Pfam ID:PF04563, PF04561, PF04565, PF04566, PF04567, PF00562, PF04560
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase II subunit RPB3
Chain IDs:C
Chain Length:275
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A481DF93
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RPOL4c domain-containing protein
Chain IDs:D
Chain Length:184
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A8D1GCS3
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase II subunit E
Gene (Uniprot):POLR2E
Chain IDs:E
Chain Length:210
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A4X1VTX4
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerases I, II, and III subunit RPABC2
Gene (Uniprot):POLR2F
Chain IDs:F
Chain Length:127
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A4X1VEK9 Pfam ID:PF01192
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase II subunit RPB7
Gene (Uniprot):POLR2G
Chain IDs:G
Chain Length:172
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A4X1VKG7
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerases I, II, and III subunit RPABC3
Gene (Uniprot):POLR2H
Chain IDs:H
Chain Length:150
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A8D1AQR7
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase II subunit RPB9
Gene (Uniprot):POLR2I
Chain IDs:I
Chain Length:819
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:P60899 Pfam ID:PF02150, PF01096
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerases I, II, and III subunit RPABC5
Gene (Uniprot):POLR2L
Chain IDs:J
Chain Length:67
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A8W4F9W9 Pfam ID:PF01194
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RNA polymerase II subunit J
Gene (Uniprot):POLR2J
Chain IDs:K
Chain Length:117
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A8D0TE17
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RNA polymerase II subunit K
Gene (Uniprot):POLR2K
Chain IDs:L
Chain Length:58
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A4X1TRS6 Pfam ID:PF03604
Polymer Type:polypeptide(L)
Molecule:Transcription elongation factor SPT6
Chain IDs:M
Chain Length:1726
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (194-MER)
Chain IDs:N
Chain Length:206
Number of Molecules:1
Biological Source:synthetic construct
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transcription elongation factor 1 homolog
Gene (Uniprot):ELOF1
Chain IDs:O
Chain Length:83
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P60002 Pfam ID:PF05129
Polymer Type:polyribonucleotide
Molecule:RNA (5'-R(P*UP*UP*UP*GP*GP*UP*GP*UP*GP*UP*CP*UP*GP*GP*GP*UP*GP*GP*UP*G)-3')
Chain IDs:P
Chain Length:39
Number of Molecules:1
Biological Source:synthetic construct
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RNA polymerase-associated protein CTR9 homolog
Gene (Uniprot):CTR9
Chain IDs:Q
Chain Length:1173
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q6PD62 Pfam ID:PF13374, PF13181
Polymer Type:polypeptide(L)
Molecule:RNA polymerase-associated protein RTF1 homolog
Chain IDs:R
Chain Length:710
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transcription elongation factor A protein 1
Gene (Uniprot):TCEA1
Chain IDs:S
Chain Length:301
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P23193 Pfam ID:PF08711, PF07500, PF01096
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (194-MER)
Chain IDs:T
Chain Length:215
Number of Molecules:1
Biological Source:synthetic construct
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RNA polymerase-associated protein LEO1
Gene (Uniprot):LEO1
Chain IDs:U
Chain Length:666
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q8WVC0 Pfam ID:PF04004
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RNA polymerase II-associated factor 1 homolog
Gene (Uniprot):PAF1
Chain IDs:V
Chain Length:531
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q8N7H5 Pfam ID:PF03985
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:WDR61
Gene (Uniprot):SKIC8
Chain IDs:W
Chain Length:305
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q9GZS3 Pfam ID:PF00400
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Parafibromin
Gene (Uniprot):CDC73
Chain IDs:X
Chain Length:531
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q6P1J9 Pfam ID:PF16050, PF05179
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transcription elongation factor SPT4
Gene (Uniprot):SUPT4H1
Chain IDs:Y
Chain Length:117
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P63272 Pfam ID:PF06093
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transcription elongation factor SPT5
Gene (Uniprot):SUPT5H
Chain IDs:Z
Chain Length:1087
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:O00267 Pfam ID:PF11942, PF03439, PF00467, PF23037, PF23288, PF23287
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Protein IWS1 homolog
Gene (Uniprot):IWS1
Chain IDs:AA (auth: i)
Chain Length:819
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q96ST2 Pfam ID:PF08711
Ligand Molecules
MG
ZN
Primary Citation
Structure and function of IWS1 in transcription elongation
To Be Published ? ? ? (?)
Primary Citation of related structures
9MLC
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