9MKY image
Deposition Date 2024-12-18
Release Date 2025-09-24
Last Version Date 2025-09-24
Entry Detail
PDB ID:
9MKY
Title:
Structure of acid-sensing ion channel 5 with calcium
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Acid-sensing ion channel 5
Gene (Uniprot):ASIC5
Chain IDs:A (auth: C), B (auth: A), C (auth: B)
Chain Length:505
Number of Molecules:3
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
The bile acid-sensitive ion channel is gated by Ca 2+ -dependent conformational changes in the transmembrane domain.
Nat Commun 16 6746 6746 (2025)
PMID: 40695804 DOI: 10.1038/s41467-025-62038-9

Abstact

The bile acid-sensitive ion channel (BASIC) is the least understood member of the mammalian epithelial Na+ channel/degenerin (ENaC/DEG) superfamily of ion channels, which are involved in a variety of physiological processes. While some members of this superfamily, including BASIC, are inhibited by extracellular Ca2+ (Ca2+o), the molecular mechanism underlying Ca2+ modulation remains unclear. Here, by determining the structure of human BASIC (hBASIC) in the presence and absence of Ca2+ using single-particle cryo-electron microscopy (cryo-EM), we reveal Ca2+-dependent conformational changes in the transmembrane domain and β-linkers. Electrophysiological experiments further show that a glutamate residue in the extracellular vestibule of the pore underpins the Ca2+-binding site, whose occupancy determines the conformation of the pore and therefore ion flow through the channel. These results reveal the molecular principles governing gating of BASIC and its regulation by Ca2+ ions, demonstrating that Ca2+ ions modulate BASIC function via changes in protein conformation rather than solely from a pore-block, as proposed for other members of this superfamily.

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Primary Citation of related structures
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