9MIL image
Deposition Date 2024-12-13
Release Date 2025-06-04
Last Version Date 2025-06-04
Entry Detail
PDB ID:
9MIL
Keywords:
Title:
Superoxide dismutase residues 28-39 with G37R mutation
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.26
R-Value Work:
0.21
R-Value Observed:
0.22
Space Group:
P 31 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Superoxide dismutase [Cu-Zn]
Gene (Uniprot):SOD1
Chain IDs:A, B, C, D, E, F, G, H, I, J
Chain Length:12
Number of Molecules:10
Biological Source:Homo sapiens
Primary Citation
Amyloid Oligomers: Expediting Crystal Growth and Revisiting the Corkscrew Structures.
J.Am.Chem.Soc. ? ? ? (2025)
PMID: 40398050 DOI: 10.1021/jacs.5c00656

Abstact

Crystallizing soluble amyloid oligomers (AOs) presents a major challenge in studying disease-related mutations associated with amyloid diseases. The G37R mutation in superoxide dismutase 1 (SOD1) is linked to early onset amyotrophic lateral sclerosis (ALS), yet its toxic mechanism remains unclear. The transient nature and low solubility of AOs often complicate the production of high-quality crystals required for X-ray crystallography (XRC) analysis. To address these challenges, we employ native ion mobility spectrometry-mass spectrometry (IMS-MS) to screen SOD1 peptides and examine correlations between structural features that reflect AO stability, their sequence length, and specific mutations. In particular, previous studies showed that the P28K mutation in SOD1(28-38) enhances solubility, thus allowing the capture of AO corkscrew structures for both SOD1(28-38)P28K and SOD1(28-38)P28K, G37R. Building on these findings, we expanded our screening to include SOD1 peptides with longer sequences, identifying structural features in IMS-MS spectra that correlate with improved crystallization potential. This approach enabled us to distinguish the stabilizing effects of G37R from those of P28K, culminating in the successful determination of the first crystal structure of the SOD1 corkscrew containing the native proline.

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Primary Citation of related structures